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GLYATL3 (glycine-N-acyltransferase like 3)

Identity

Alias_namesC6orf140
chromosome 6 open reading frame 140
glycine-N-acyltransferase-like 3
Alias_symbol (synonym)bA28H17.2
Other alias
HGNC (Hugo) GLYATL3
LocusID (NCBI) 389396
Atlas_Id 63841
Location 6p12.3  [Link to chromosome band 6p12]
Location_base_pair Starts at 49499958 and ends at 49528064 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLYATL3   21349
Cards
Entrez_Gene (NCBI)GLYATL3  389396  glycine-N-acyltransferase like 3
AliasesC6orf140; bA28H17.2
GeneCards (Weizmann)GLYATL3
Ensembl hg19 (Hinxton)ENSG00000203972 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203972 [Gene_View]  ENSG00000203972 [Sequence]  chr6:49499958-49528064 [Contig_View]  GLYATL3 [Vega]
ICGC DataPortalENSG00000203972
TCGA cBioPortalGLYATL3
AceView (NCBI)GLYATL3
Genatlas (Paris)GLYATL3
WikiGenes389396
SOURCE (Princeton)GLYATL3
Genetics Home Reference (NIH)GLYATL3
Genomic and cartography
GoldenPath hg38 (UCSC)GLYATL3  -     chr6:49499958-49528064 +  6p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLYATL3  -     6p12.3   [Description]    (hg19-Feb_2009)
EnsemblGLYATL3 - 6p12.3 [CytoView hg19]  GLYATL3 - 6p12.3 [CytoView hg38]
Mapping of homologs : NCBIGLYATL3 [Mapview hg19]  GLYATL3 [Mapview hg38]
OMIM614763   
Gene and transcription
Genbank (Entrez)AW591696 DB246049
RefSeq transcript (Entrez)NM_001010904
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLYATL3
Cluster EST : UnigeneHs.585172 [ NCBI ]
CGAP (NCI)Hs.585172
Alternative Splicing GalleryENSG00000203972
Gene ExpressionGLYATL3 [ NCBI-GEO ]   GLYATL3 [ EBI - ARRAY_EXPRESS ]   GLYATL3 [ SEEK ]   GLYATL3 [ MEM ]
Gene Expression Viewer (FireBrowse)GLYATL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389396
GTEX Portal (Tissue expression)GLYATL3
Human Protein AtlasENSG00000203972-GLYATL3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SZD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SZD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SZD4
Splice isoforms : SwissVarQ5SZD4
PhosPhoSitePlusQ5SZD4
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    Glycine_N-acyltransferase    Glycine_N-acyltransferase_C    Glycine_N-acyltransferase_N   
Domain families : Pfam (Sanger)Gly_acyl_tr_C (PF08444)    Gly_acyl_tr_N (PF06021)   
Domain families : Pfam (NCBI)pfam08444    pfam06021   
Conserved Domain (NCBI)GLYATL3
DMDM Disease mutations389396
Blocks (Seattle)GLYATL3
SuperfamilyQ5SZD4
Human Protein Atlas [tissue]ENSG00000203972-GLYATL3 [tissue]
Peptide AtlasQ5SZD4
IPIIPI00514886   IPI01015061   
Protein Interaction databases
DIP (DOE-UCLA)Q5SZD4
IntAct (EBI)Q5SZD4
FunCoupENSG00000203972
BioGRIDGLYATL3
STRING (EMBL)GLYATL3
ZODIACGLYATL3
Ontologies - Pathways
QuickGOQ5SZD4
Ontology : AmiGOmitochondrion  glycine N-acyltransferase activity  
Ontology : EGO-EBImitochondrion  glycine N-acyltransferase activity  
NDEx NetworkGLYATL3
Atlas of Cancer Signalling NetworkGLYATL3
Wikipedia pathwaysGLYATL3
Orthology - Evolution
OrthoDB389396
GeneTree (enSembl)ENSG00000203972
Phylogenetic Trees/Animal Genes : TreeFamGLYATL3
HOVERGENQ5SZD4
HOGENOMQ5SZD4
Homologs : HomoloGeneGLYATL3
Homology/Alignments : Family Browser (UCSC)GLYATL3
Gene fusions - Rearrangements
Fusion : QuiverGLYATL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLYATL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLYATL3
dbVarGLYATL3
ClinVarGLYATL3
1000_GenomesGLYATL3 
Exome Variant ServerGLYATL3
ExAC (Exome Aggregation Consortium)ENSG00000203972
GNOMAD BrowserENSG00000203972
Varsome BrowserGLYATL3
Genetic variants : HAPMAP389396
Genomic Variants (DGV)GLYATL3 [DGVbeta]
DECIPHERGLYATL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLYATL3 
Mutations
ICGC Data PortalGLYATL3 
TCGA Data PortalGLYATL3 
Broad Tumor PortalGLYATL3
OASIS PortalGLYATL3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLYATL3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLYATL3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLYATL3
DgiDB (Drug Gene Interaction Database)GLYATL3
DoCM (Curated mutations)GLYATL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLYATL3 (select a term)
intoGenGLYATL3
Cancer3DGLYATL3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614763   
Orphanet
DisGeNETGLYATL3
MedgenGLYATL3
Genetic Testing Registry GLYATL3
NextProtQ5SZD4 [Medical]
TSGene389396
GENETestsGLYATL3
Target ValidationGLYATL3
Huge Navigator GLYATL3 [HugePedia]
snp3D : Map Gene to Disease389396
BioCentury BCIQGLYATL3
ClinGenGLYATL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389396
Chemical/Pharm GKB GenePA165617919
Clinical trialGLYATL3
Miscellaneous
canSAR (ICR)GLYATL3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLYATL3
EVEXGLYATL3
GoPubMedGLYATL3
iHOPGLYATL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:47:27 CEST 2018

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