Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GLYCAM1 (glycosylation dependent cell adhesion molecule 1 (pseudogene))

Identity

Alias_namesglycosylation dependent cell adhesion molecule 1
Other alias-
HGNC (Hugo) GLYCAM1
LocusID (NCBI) 644076
Atlas_Id 63842
Location 12q13.2  [Link to chromosome band 12q13]
Location_base_pair Starts at 54608187 and ends at 54610462 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLYCAM1   18023
Cards
Entrez_Gene (NCBI)GLYCAM1  644076  glycosylation dependent cell adhesion molecule 1 (pseudogene)
Aliases
GeneCards (Weizmann)GLYCAM1
Ensembl hg19 (Hinxton)ENSG00000257780 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257780 [Gene_View]  chr12:54608187-54610462 [Contig_View]  GLYCAM1 [Vega]
ICGC DataPortalENSG00000257780
TCGA cBioPortalGLYCAM1
AceView (NCBI)GLYCAM1
Genatlas (Paris)GLYCAM1
WikiGenes644076
SOURCE (Princeton)GLYCAM1
Genetics Home Reference (NIH)GLYCAM1
Genomic and cartography
GoldenPath hg38 (UCSC)GLYCAM1  -     chr12:54608187-54610462 -  12q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLYCAM1  -     12q13.2   [Description]    (hg19-Feb_2009)
EnsemblGLYCAM1 - 12q13.2 [CytoView hg19]  GLYCAM1 - 12q13.2 [CytoView hg38]
Mapping of homologs : NCBIGLYCAM1 [Mapview hg19]  GLYCAM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ489589 AJ489590 AJ489591 AJ489592 AJ489593
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLYCAM1
Cluster EST : UnigeneHs.483519 [ NCBI ]
CGAP (NCI)Hs.483519
Alternative Splicing GalleryENSG00000257780
Gene ExpressionGLYCAM1 [ NCBI-GEO ]   GLYCAM1 [ EBI - ARRAY_EXPRESS ]   GLYCAM1 [ SEEK ]   GLYCAM1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLYCAM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644076
GTEX Portal (Tissue expression)GLYCAM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVK1
Splice isoforms : SwissVarQ8IVK1
PhosPhoSitePlusQ8IVK1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GLYCAM1
DMDM Disease mutations644076
Blocks (Seattle)GLYCAM1
SuperfamilyQ8IVK1
Human Protein AtlasENSG00000257780
Peptide AtlasQ8IVK1
IPIIPI00383418   IPI00896388   IPI00976345   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVK1
IntAct (EBI)Q8IVK1
FunCoupENSG00000257780
BioGRIDGLYCAM1
STRING (EMBL)GLYCAM1
ZODIACGLYCAM1
Ontologies - Pathways
QuickGOQ8IVK1
Ontology : AmiGOplasma membrane  regulation of immune response  
Ontology : EGO-EBIplasma membrane  regulation of immune response  
Pathways : BIOCARTAAdhesion and Diapedesis of Lymphocytes [Genes]   
NDEx NetworkGLYCAM1
Atlas of Cancer Signalling NetworkGLYCAM1
Wikipedia pathwaysGLYCAM1
Orthology - Evolution
OrthoDB644076
GeneTree (enSembl)ENSG00000257780
Phylogenetic Trees/Animal Genes : TreeFamGLYCAM1
HOVERGENQ8IVK1
HOGENOMQ8IVK1
Homologs : HomoloGeneGLYCAM1
Homology/Alignments : Family Browser (UCSC)GLYCAM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLYCAM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLYCAM1
dbVarGLYCAM1
ClinVarGLYCAM1
1000_GenomesGLYCAM1 
Exome Variant ServerGLYCAM1
ExAC (Exome Aggregation Consortium)GLYCAM1 (select the gene name)
Genetic variants : HAPMAP644076
Genomic Variants (DGV)GLYCAM1 [DGVbeta]
DECIPHERGLYCAM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLYCAM1 
Mutations
ICGC Data PortalGLYCAM1 
TCGA Data PortalGLYCAM1 
Broad Tumor PortalGLYCAM1
OASIS PortalGLYCAM1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGLYCAM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLYCAM1
DgiDB (Drug Gene Interaction Database)GLYCAM1
DoCM (Curated mutations)GLYCAM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLYCAM1 (select a term)
intoGenGLYCAM1
Cancer3DGLYCAM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGLYCAM1
Genetic Testing Registry GLYCAM1
NextProtQ8IVK1 [Medical]
TSGene644076
GENETestsGLYCAM1
Target ValidationGLYCAM1
Huge Navigator GLYCAM1 [HugePedia]
snp3D : Map Gene to Disease644076
BioCentury BCIQGLYCAM1
ClinGenGLYCAM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644076
Chemical/Pharm GKB GenePA134871015
Clinical trialGLYCAM1
Miscellaneous
canSAR (ICR)GLYCAM1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLYCAM1
EVEXGLYCAM1
GoPubMedGLYCAM1
iHOPGLYCAM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:49 CEST 2017

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