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GMCL1P1 (germ cell-less, spermatogenesis associated 1 pseudogene 1)

Identity

Alias_namesGMCL1L
germ cell-less homolog 1 (Drosophila)-like
germ cell-less homolog 1 (Drosophila) pseudogene 1
Alias_symbol (synonym)GMCL2
GCL
Other alias
HGNC (Hugo) GMCL1P1
LocusID (NCBI) 64396
Atlas_Id 63848
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 178185382 and ends at 178186881 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GMCL1P1   19717
Cards
Entrez_Gene (NCBI)GMCL1P1  64396  germ cell-less, spermatogenesis associated 1 pseudogene 1
AliasesGCL; GMCL1L; GMCL2
GeneCards (Weizmann)GMCL1P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:178185382-178186881 [Contig_View]  GMCL1P1 [Vega]
TCGA cBioPortalGMCL1P1
AceView (NCBI)GMCL1P1
Genatlas (Paris)GMCL1P1
WikiGenes64396
SOURCE (Princeton)GMCL1P1
Genetics Home Reference (NIH)GMCL1P1
Genomic and cartography
GoldenPath hg38 (UCSC)GMCL1P1  -     chr5:178185382-178186881 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GMCL1P1  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblGMCL1P1 - 5q35.3 [CytoView hg19]  GMCL1P1 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIGMCL1P1 [Mapview hg19]  GMCL1P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF198534 AK315701 BC024184 BC024185 BC033886
RefSeq transcript (Entrez)NM_022471
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GMCL1P1
Cluster EST : UnigeneHs.591738 [ NCBI ]
CGAP (NCI)Hs.591738
Gene ExpressionGMCL1P1 [ NCBI-GEO ]   GMCL1P1 [ EBI - ARRAY_EXPRESS ]   GMCL1P1 [ SEEK ]   GMCL1P1 [ MEM ]
Gene Expression Viewer (FireBrowse)GMCL1P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64396
GTEX Portal (Tissue expression)GMCL1P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEA9
Splice isoforms : SwissVarQ8NEA9
PhosPhoSitePlusQ8NEA9
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)GMCL1P1
DMDM Disease mutations64396
Blocks (Seattle)GMCL1P1
SuperfamilyQ8NEA9
Peptide AtlasQ8NEA9
HPRD17044
IPIIPI00252570   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEA9
IntAct (EBI)Q8NEA9
BioGRIDGMCL1P1
STRING (EMBL)GMCL1P1
ZODIACGMCL1P1
Ontologies - Pathways
QuickGOQ8NEA9
Ontology : AmiGOubiquitin ligase complex  protein binding  nucleus  multicellular organism development  spermatogenesis  nuclear matrix  protein ubiquitination  cell differentiation  
Ontology : EGO-EBIubiquitin ligase complex  protein binding  nucleus  multicellular organism development  spermatogenesis  nuclear matrix  protein ubiquitination  cell differentiation  
NDEx NetworkGMCL1P1
Atlas of Cancer Signalling NetworkGMCL1P1
Wikipedia pathwaysGMCL1P1
Orthology - Evolution
OrthoDB64396
Phylogenetic Trees/Animal Genes : TreeFamGMCL1P1
HOVERGENQ8NEA9
HOGENOMQ8NEA9
Homologs : HomoloGeneGMCL1P1
Homology/Alignments : Family Browser (UCSC)GMCL1P1
Gene fusions - Rearrangements
Fusion: Tumor Portal GMCL1P1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGMCL1P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GMCL1P1
dbVarGMCL1P1
ClinVarGMCL1P1
1000_GenomesGMCL1P1 
Exome Variant ServerGMCL1P1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP64396
Genomic Variants (DGV)GMCL1P1 [DGVbeta]
DECIPHERGMCL1P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGMCL1P1 
Mutations
ICGC Data PortalGMCL1P1 
TCGA Data PortalGMCL1P1 
Broad Tumor PortalGMCL1P1
OASIS PortalGMCL1P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGMCL1P1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GMCL1P1
DgiDB (Drug Gene Interaction Database)GMCL1P1
DoCM (Curated mutations)GMCL1P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GMCL1P1 (select a term)
intoGenGMCL1P1
Cancer3DGMCL1P1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGMCL1P1
Genetic Testing Registry GMCL1P1
NextProtQ8NEA9 [Medical]
TSGene64396
GENETestsGMCL1P1
Target ValidationGMCL1P1
Huge Navigator GMCL1P1 [HugePedia]
snp3D : Map Gene to Disease64396
BioCentury BCIQGMCL1P1
ClinGenGMCL1P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64396
Chemical/Pharm GKB GenePA143485478
Clinical trialGMCL1P1
Miscellaneous
canSAR (ICR)GMCL1P1 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGMCL1P1
EVEXGMCL1P1
GoPubMedGMCL1P1
iHOPGMCL1P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:49:11 CET 2017

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