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GMCL2 (germ cell-less 2, spermatogenesis associated)

Identity

Other aliasGCL
GMCL1L
GMCL1P1
HGNC (Hugo) GMCL2
LocusID (NCBI) 64396
Atlas_Id 80369
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 178184503 and ends at 178187432 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)GMCL2   19717
Cards
Entrez_Gene (NCBI)GMCL2  64396  germ cell-less 2, spermatogenesis associated
AliasesGCL; GMCL1L; GMCL1P1
GeneCards (Weizmann)GMCL2
Ensembl hg19 (Hinxton)ENSG00000244234 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000244234 [Gene_View]  ENSG00000244234 [Sequence]  chr5:178184503-178187432 [Contig_View]  GMCL2 [Vega]
ICGC DataPortalENSG00000244234
TCGA cBioPortalGMCL2
AceView (NCBI)GMCL2
Genatlas (Paris)GMCL2
WikiGenes64396
SOURCE (Princeton)GMCL2
Genetics Home Reference (NIH)GMCL2
Genomic and cartography
GoldenPath hg38 (UCSC)GMCL2  -     chr5:178184503-178187432 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GMCL2  -     5q35.3   [Description]    (hg19-Feb_2009)
GoldenPathGMCL2 - 5q35.3 [CytoView hg19]  GMCL2 - 5q35.3 [CytoView hg38]
ImmunoBaseENSG00000244234
Mapping of homologs : NCBIGMCL2 [Mapview hg19]  GMCL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF198534 AK315701 BC024184 BC024185 BC033886
RefSeq transcript (Entrez)NM_001358008 NM_022471
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GMCL2
Cluster EST : UnigeneHs.591738 [ NCBI ]
CGAP (NCI)Hs.591738
Alternative Splicing GalleryENSG00000244234
Gene ExpressionGMCL2 [ NCBI-GEO ]   GMCL2 [ EBI - ARRAY_EXPRESS ]   GMCL2 [ SEEK ]   GMCL2 [ MEM ]
Gene Expression Viewer (FireBrowse)GMCL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64396
GTEX Portal (Tissue expression)GMCL2
Human Protein AtlasENSG00000244234-GMCL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEA9
Splice isoforms : SwissVarQ8NEA9
PhosPhoSitePlusQ8NEA9
Domaine pattern : Prosite (Expaxy)BTB (PS50097)   
Domains : Interpro (EBI)BTB/POZ_dom    SKP1/BTB/POZ_sf   
Domain families : Pfam (Sanger)BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00651   
Domain families : Smart (EMBL)BTB (SM00225)  
Conserved Domain (NCBI)GMCL2
DMDM Disease mutations64396
Blocks (Seattle)GMCL2
SuperfamilyQ8NEA9
Human Protein Atlas [tissue]ENSG00000244234-GMCL2 [tissue]
Peptide AtlasQ8NEA9
IPIIPI00252570   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEA9
IntAct (EBI)Q8NEA9
FunCoupENSG00000244234
BioGRIDGMCL2
STRING (EMBL)GMCL2
ZODIACGMCL2
Ontologies - Pathways
QuickGOQ8NEA9
Ontology : AmiGOprotein binding  multicellular organism development  spermatogenesis  nuclear matrix  protein ubiquitination  cell differentiation  
Ontology : EGO-EBIprotein binding  multicellular organism development  spermatogenesis  nuclear matrix  protein ubiquitination  cell differentiation  
NDEx NetworkGMCL2
Atlas of Cancer Signalling NetworkGMCL2
Wikipedia pathwaysGMCL2
Orthology - Evolution
OrthoDB64396
GeneTree (enSembl)ENSG00000244234
Phylogenetic Trees/Animal Genes : TreeFamGMCL2
HOGENOMQ8NEA9
Homologs : HomoloGeneGMCL2
Homology/Alignments : Family Browser (UCSC)GMCL2
Gene fusions - Rearrangements
Fusion : QuiverGMCL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGMCL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GMCL2
dbVarGMCL2
ClinVarGMCL2
1000_GenomesGMCL2 
Exome Variant ServerGMCL2
ExAC (Exome Aggregation Consortium)ENSG00000244234
GNOMAD BrowserENSG00000244234
Varsome BrowserGMCL2
Genetic variants : HAPMAP64396
Genomic Variants (DGV)GMCL2 [DGVbeta]
DECIPHERGMCL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGMCL2 
Mutations
ICGC Data PortalGMCL2 
TCGA Data PortalGMCL2 
Broad Tumor PortalGMCL2
OASIS PortalGMCL2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGMCL2
BioMutasearch GMCL2
DgiDB (Drug Gene Interaction Database)GMCL2
DoCM (Curated mutations)GMCL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GMCL2 (select a term)
intoGenGMCL2
Cancer3DGMCL2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGMCL2
MedgenGMCL2
Genetic Testing Registry GMCL2
NextProtQ8NEA9 [Medical]
TSGene64396
GENETestsGMCL2
Target ValidationGMCL2
Huge Navigator GMCL2 [HugePedia]
snp3D : Map Gene to Disease64396
BioCentury BCIQGMCL2
ClinGenGMCL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64396
Chemical/Pharm GKB GenePA143485478
Clinical trialGMCL2
Miscellaneous
canSAR (ICR)GMCL2 (select the gene name)
DataMed IndexGMCL2
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGMCL2
EVEXGMCL2
GoPubMedGMCL2
iHOPGMCL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:29:51 CEST 2019

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