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GMEB1 (glucocorticoid modulatory element binding protein 1)

Identity

Alias_symbol (synonym)P96PIF
PIF96
Other alias
HGNC (Hugo) GMEB1
LocusID (NCBI) 10691
Atlas_Id 56335
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 28668728 and ends at 28715603 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GMEB1 (1p35.3) / TRNAU1AP (1p35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GMEB1   4370
Cards
Entrez_Gene (NCBI)GMEB1  10691  glucocorticoid modulatory element binding protein 1
AliasesP96PIF; PIF96
GeneCards (Weizmann)GMEB1
Ensembl hg19 (Hinxton)ENSG00000162419 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162419 [Gene_View]  chr1:28668728-28715603 [Contig_View]  GMEB1 [Vega]
ICGC DataPortalENSG00000162419
TCGA cBioPortalGMEB1
AceView (NCBI)GMEB1
Genatlas (Paris)GMEB1
WikiGenes10691
SOURCE (Princeton)GMEB1
Genetics Home Reference (NIH)GMEB1
Genomic and cartography
GoldenPath hg38 (UCSC)GMEB1  -     chr1:28668728-28715603 +  1p35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GMEB1  -     1p35.3   [Description]    (hg19-Feb_2009)
EnsemblGMEB1 - 1p35.3 [CytoView hg19]  GMEB1 - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBIGMEB1 [Mapview hg19]  GMEB1 [Mapview hg38]
OMIM604409   
Gene and transcription
Genbank (Entrez)AF099013 AF173868 AF203694 AK000892 AK023126
RefSeq transcript (Entrez)NM_001319674 NM_006582 NM_024482
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GMEB1
Cluster EST : UnigeneHs.632373 [ NCBI ]
CGAP (NCI)Hs.632373
Alternative Splicing GalleryENSG00000162419
Gene ExpressionGMEB1 [ NCBI-GEO ]   GMEB1 [ EBI - ARRAY_EXPRESS ]   GMEB1 [ SEEK ]   GMEB1 [ MEM ]
Gene Expression Viewer (FireBrowse)GMEB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10691
GTEX Portal (Tissue expression)GMEB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y692   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y692  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y692
Splice isoforms : SwissVarQ9Y692
PhosPhoSitePlusQ9Y692
Domaine pattern : Prosite (Expaxy)SAND (PS50864)   
Domains : Interpro (EBI)GMEB1/2    SAND_dom    SAND_dom-like   
Domain families : Pfam (Sanger)SAND (PF01342)   
Domain families : Pfam (NCBI)pfam01342   
Domain families : Smart (EMBL)SAND (SM00258)  
Conserved Domain (NCBI)GMEB1
DMDM Disease mutations10691
Blocks (Seattle)GMEB1
PDB (SRS)1OQJ   
PDB (PDBSum)1OQJ   
PDB (IMB)1OQJ   
PDB (RSDB)1OQJ   
Structural Biology KnowledgeBase1OQJ   
SCOP (Structural Classification of Proteins)1OQJ   
CATH (Classification of proteins structures)1OQJ   
SuperfamilyQ9Y692
Human Protein AtlasENSG00000162419
Peptide AtlasQ9Y692
HPRD16059
IPIIPI00008601   IPI00215883   IPI00641457   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y692
IntAct (EBI)Q9Y692
FunCoupENSG00000162419
BioGRIDGMEB1
STRING (EMBL)GMEB1
ZODIACGMEB1
Ontologies - Pathways
QuickGOQ9Y692
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcription coactivator activity  nucleus  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcription coactivator activity  nucleus  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkGMEB1
Atlas of Cancer Signalling NetworkGMEB1
Wikipedia pathwaysGMEB1
Orthology - Evolution
OrthoDB10691
GeneTree (enSembl)ENSG00000162419
Phylogenetic Trees/Animal Genes : TreeFamGMEB1
HOVERGENQ9Y692
HOGENOMQ9Y692
Homologs : HomoloGeneGMEB1
Homology/Alignments : Family Browser (UCSC)GMEB1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGMEB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GMEB1
dbVarGMEB1
ClinVarGMEB1
1000_GenomesGMEB1 
Exome Variant ServerGMEB1
ExAC (Exome Aggregation Consortium)GMEB1 (select the gene name)
Genetic variants : HAPMAP10691
Genomic Variants (DGV)GMEB1 [DGVbeta]
DECIPHERGMEB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGMEB1 
Mutations
ICGC Data PortalGMEB1 
TCGA Data PortalGMEB1 
Broad Tumor PortalGMEB1
OASIS PortalGMEB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGMEB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGMEB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GMEB1
DgiDB (Drug Gene Interaction Database)GMEB1
DoCM (Curated mutations)GMEB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GMEB1 (select a term)
intoGenGMEB1
Cancer3DGMEB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604409   
Orphanet
MedgenGMEB1
Genetic Testing Registry GMEB1
NextProtQ9Y692 [Medical]
TSGene10691
GENETestsGMEB1
Target ValidationGMEB1
Huge Navigator GMEB1 [HugePedia]
snp3D : Map Gene to Disease10691
BioCentury BCIQGMEB1
ClinGenGMEB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10691
Chemical/Pharm GKB GenePA28755
Clinical trialGMEB1
Miscellaneous
canSAR (ICR)GMEB1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGMEB1
EVEXGMEB1
GoPubMedGMEB1
iHOPGMEB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:54:24 CEST 2017

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