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GMEB2 (glucocorticoid modulatory element binding protein 2)

Identity

Alias_symbol (synonym)P79PIF
KIAA1269
PIF79
Other aliasGMEB-2
HGNC (Hugo) GMEB2
LocusID (NCBI) 26205
Atlas_Id 63851
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63587594 and ends at 63627101 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EXD2 (14q24.1) / GMEB2 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GMEB2   4371
Cards
Entrez_Gene (NCBI)GMEB2  26205  glucocorticoid modulatory element binding protein 2
AliasesGMEB-2; P79PIF; PIF79
GeneCards (Weizmann)GMEB2
Ensembl hg19 (Hinxton)ENSG00000101216 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101216 [Gene_View]  chr20:63587594-63627101 [Contig_View]  GMEB2 [Vega]
ICGC DataPortalENSG00000101216
TCGA cBioPortalGMEB2
AceView (NCBI)GMEB2
Genatlas (Paris)GMEB2
WikiGenes26205
SOURCE (Princeton)GMEB2
Genetics Home Reference (NIH)GMEB2
Genomic and cartography
GoldenPath hg38 (UCSC)GMEB2  -     chr20:63587594-63627101 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GMEB2  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblGMEB2 - 20q13.33 [CytoView hg19]  GMEB2 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIGMEB2 [Mapview hg19]  GMEB2 [Mapview hg38]
OMIM607451   
Gene and transcription
Genbank (Entrez)AB033095 AF173867 AK298927 AL117510 AL133646
RefSeq transcript (Entrez)NM_012384
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GMEB2
Cluster EST : UnigeneHs.473286 [ NCBI ]
CGAP (NCI)Hs.473286
Alternative Splicing GalleryENSG00000101216
Gene ExpressionGMEB2 [ NCBI-GEO ]   GMEB2 [ EBI - ARRAY_EXPRESS ]   GMEB2 [ SEEK ]   GMEB2 [ MEM ]
Gene Expression Viewer (FireBrowse)GMEB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26205
GTEX Portal (Tissue expression)GMEB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKD1
Splice isoforms : SwissVarQ9UKD1
PhosPhoSitePlusQ9UKD1
Domaine pattern : Prosite (Expaxy)SAND (PS50864)   
Domains : Interpro (EBI)GMEB1/2    SAND_dom    SAND_dom-like   
Domain families : Pfam (Sanger)SAND (PF01342)   
Domain families : Pfam (NCBI)pfam01342   
Domain families : Smart (EMBL)SAND (SM00258)  
Conserved Domain (NCBI)GMEB2
DMDM Disease mutations26205
Blocks (Seattle)GMEB2
SuperfamilyQ9UKD1
Human Protein AtlasENSG00000101216
Peptide AtlasQ9UKD1
HPRD16245
IPIIPI00159770   IPI00908642   IPI00645960   
Protein Interaction databases
DIP (DOE-UCLA)Q9UKD1
IntAct (EBI)Q9UKD1
FunCoupENSG00000101216
BioGRIDGMEB2
STRING (EMBL)GMEB2
ZODIACGMEB2
Ontologies - Pathways
QuickGOQ9UKD1
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcription coactivator activity  protein binding  nucleus  nucleoplasm  cytosol  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcription coactivator activity  protein binding  nucleus  nucleoplasm  cytosol  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkGMEB2
Atlas of Cancer Signalling NetworkGMEB2
Wikipedia pathwaysGMEB2
Orthology - Evolution
OrthoDB26205
GeneTree (enSembl)ENSG00000101216
Phylogenetic Trees/Animal Genes : TreeFamGMEB2
HOVERGENQ9UKD1
HOGENOMQ9UKD1
Homologs : HomoloGeneGMEB2
Homology/Alignments : Family Browser (UCSC)GMEB2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGMEB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GMEB2
dbVarGMEB2
ClinVarGMEB2
1000_GenomesGMEB2 
Exome Variant ServerGMEB2
ExAC (Exome Aggregation Consortium)GMEB2 (select the gene name)
Genetic variants : HAPMAP26205
Genomic Variants (DGV)GMEB2 [DGVbeta]
DECIPHERGMEB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGMEB2 
Mutations
ICGC Data PortalGMEB2 
TCGA Data PortalGMEB2 
Broad Tumor PortalGMEB2
OASIS PortalGMEB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGMEB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGMEB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GMEB2
DgiDB (Drug Gene Interaction Database)GMEB2
DoCM (Curated mutations)GMEB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GMEB2 (select a term)
intoGenGMEB2
Cancer3DGMEB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607451   
Orphanet
MedgenGMEB2
Genetic Testing Registry GMEB2
NextProtQ9UKD1 [Medical]
TSGene26205
GENETestsGMEB2
Target ValidationGMEB2
Huge Navigator GMEB2 [HugePedia]
snp3D : Map Gene to Disease26205
BioCentury BCIQGMEB2
ClinGenGMEB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26205
Chemical/Pharm GKB GenePA28756
Clinical trialGMEB2
Miscellaneous
canSAR (ICR)GMEB2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGMEB2
EVEXGMEB2
GoPubMedGMEB2
iHOPGMEB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:31 CEST 2017

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