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GMEB2 (glucocorticoid modulatory element binding protein 2)

Identity

Alias (NCBI)GMEB-2
P79PIF
PIF79
HGNC (Hugo) GMEB2
HGNC Alias symbP79PIF
KIAA1269
PIF79
LocusID (NCBI) 26205
Atlas_Id 63851
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63587605 and ends at 63627101 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EXD2 (14q24.1) / GMEB2 (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GMEB2   4371
Cards
Entrez_Gene (NCBI)GMEB2    glucocorticoid modulatory element binding protein 2
AliasesGMEB-2; P79PIF; PIF79
GeneCards (Weizmann)GMEB2
Ensembl hg19 (Hinxton)ENSG00000101216 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101216 [Gene_View]  ENSG00000101216 [Sequence]  chr20:63587605-63627101 [Contig_View]  GMEB2 [Vega]
ICGC DataPortalENSG00000101216
TCGA cBioPortalGMEB2
AceView (NCBI)GMEB2
Genatlas (Paris)GMEB2
SOURCE (Princeton)GMEB2
Genetics Home Reference (NIH)GMEB2
Genomic and cartography
GoldenPath hg38 (UCSC)GMEB2  -     chr20:63587605-63627101 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GMEB2  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathGMEB2 - 20q13.33 [CytoView hg19]  GMEB2 - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000101216
Genome Data Viewer NCBIGMEB2 [Mapview hg19]  
OMIM607451   
Gene and transcription
Genbank (Entrez)AB033095 AF173867 AK298927 AL117510 AL133646
RefSeq transcript (Entrez)NM_012384
Consensus coding sequences : CCDS (NCBI)GMEB2
Gene ExpressionGMEB2 [ NCBI-GEO ]   GMEB2 [ EBI - ARRAY_EXPRESS ]   GMEB2 [ SEEK ]   GMEB2 [ MEM ]
Gene Expression Viewer (FireBrowse)GMEB2 [ Firebrowse - Broad ]
GenevisibleExpression of GMEB2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26205
GTEX Portal (Tissue expression)GMEB2
Human Protein AtlasENSG00000101216-GMEB2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UKD1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UKD1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UKD1
PhosPhoSitePlusQ9UKD1
Domaine pattern : Prosite (Expaxy)SAND (PS50864)   
Domains : Interpro (EBI)GMEB1/2    SAND-like_dom_sf    SAND_dom   
Domain families : Pfam (Sanger)SAND (PF01342)   
Domain families : Pfam (NCBI)pfam01342   
Domain families : Smart (EMBL)SAND (SM00258)  
Conserved Domain (NCBI)GMEB2
SuperfamilyQ9UKD1
AlphaFold pdb e-kbQ9UKD1   
Human Protein Atlas [tissue]ENSG00000101216-GMEB2 [tissue]
HPRD16245
Protein Interaction databases
DIP (DOE-UCLA)Q9UKD1
IntAct (EBI)Q9UKD1
BioGRIDGMEB2
STRING (EMBL)GMEB2
ZODIACGMEB2
Ontologies - Pathways
QuickGOQ9UKD1
Ontology : AmiGOchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  nucleoplasm  cytosol  regulation of transcription by RNA polymerase II  transcription by RNA polymerase II  identical protein binding  positive regulation of transcription by RNA polymerase II  metal ion binding  sequence-specific double-stranded DNA binding  
Ontology : EGO-EBIchromatin  RNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  protein binding  nucleus  nucleoplasm  cytosol  regulation of transcription by RNA polymerase II  transcription by RNA polymerase II  identical protein binding  positive regulation of transcription by RNA polymerase II  metal ion binding  sequence-specific double-stranded DNA binding  
NDEx NetworkGMEB2
Atlas of Cancer Signalling NetworkGMEB2
Wikipedia pathwaysGMEB2
Orthology - Evolution
OrthoDB26205
GeneTree (enSembl)ENSG00000101216
Phylogenetic Trees/Animal Genes : TreeFamGMEB2
Homologs : HomoloGeneGMEB2
Homology/Alignments : Family Browser (UCSC)GMEB2
Gene fusions - Rearrangements
Fusion : QuiverGMEB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGMEB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GMEB2
dbVarGMEB2
ClinVarGMEB2
MonarchGMEB2
1000_GenomesGMEB2 
Exome Variant ServerGMEB2
GNOMAD BrowserENSG00000101216
Varsome BrowserGMEB2
ACMGGMEB2 variants
VarityQ9UKD1
Genomic Variants (DGV)GMEB2 [DGVbeta]
DECIPHERGMEB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGMEB2 
Mutations
ICGC Data PortalGMEB2 
TCGA Data PortalGMEB2 
Broad Tumor PortalGMEB2
OASIS PortalGMEB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGMEB2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGMEB2
Mutations and Diseases : HGMDGMEB2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGMEB2
DgiDB (Drug Gene Interaction Database)GMEB2
DoCM (Curated mutations)GMEB2
CIViC (Clinical Interpretations of Variants in Cancer)GMEB2
Cancer3DGMEB2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607451   
Orphanet
DisGeNETGMEB2
MedgenGMEB2
Genetic Testing Registry GMEB2
NextProtQ9UKD1 [Medical]
GENETestsGMEB2
Target ValidationGMEB2
Huge Navigator GMEB2 [HugePedia]
ClinGenGMEB2
Clinical trials, drugs, therapy
MyCancerGenomeGMEB2
Protein Interactions : CTDGMEB2
Pharm GKB GenePA28756
PharosQ9UKD1
Clinical trialGMEB2
Miscellaneous
canSAR (ICR)GMEB2
HarmonizomeGMEB2
DataMed IndexGMEB2
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGMEB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:51:38 CEST 2021

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