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GMFG (glia maturation factor gamma)

Identity

Other aliasGMF-GAMMA
HGNC (Hugo) GMFG
LocusID (NCBI) 9535
Atlas_Id 56763
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 39328357 and ends at 39336086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GMFG (19q13.2) / KDELR1 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GMFG   4374
Cards
Entrez_Gene (NCBI)GMFG  9535  glia maturation factor gamma
AliasesGMF-GAMMA
GeneCards (Weizmann)GMFG
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:39328357-39336086 [Contig_View]  GMFG [Vega]
TCGA cBioPortalGMFG
AceView (NCBI)GMFG
Genatlas (Paris)GMFG
WikiGenes9535
SOURCE (Princeton)GMFG
Genetics Home Reference (NIH)GMFG
Genomic and cartography
GoldenPath hg38 (UCSC)GMFG  -     chr19:39328357-39336086 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GMFG  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblGMFG - 19q13.2 [CytoView hg19]  GMFG - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIGMFG [Mapview hg19]  GMFG [Mapview hg38]
OMIM604104   
Gene and transcription
Genbank (Entrez)AA648706 AB001993 AF038956 AV714415 BC022207
RefSeq transcript (Entrez)NM_001301008 NM_004877
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GMFG
Cluster EST : UnigeneHs.5210 [ NCBI ]
CGAP (NCI)Hs.5210
Gene ExpressionGMFG [ NCBI-GEO ]   GMFG [ EBI - ARRAY_EXPRESS ]   GMFG [ SEEK ]   GMFG [ MEM ]
Gene Expression Viewer (FireBrowse)GMFG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9535
GTEX Portal (Tissue expression)GMFG
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60234   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60234  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60234
Splice isoforms : SwissVarO60234
PhosPhoSitePlusO60234
Domaine pattern : Prosite (Expaxy)ADF_H (PS51263)   
Domains : Interpro (EBI)ADF-H    ADF-H/Gelsolin-like_dom    GMF    GMFG   
Domain families : Pfam (Sanger)Cofilin_ADF (PF00241)   
Domain families : Pfam (NCBI)pfam00241   
Domain families : Smart (EMBL)ADF (SM00102)  
Conserved Domain (NCBI)GMFG
DMDM Disease mutations9535
Blocks (Seattle)GMFG
PDB (SRS)3L50   
PDB (PDBSum)3L50   
PDB (IMB)3L50   
PDB (RSDB)3L50   
Structural Biology KnowledgeBase3L50   
SCOP (Structural Classification of Proteins)3L50   
CATH (Classification of proteins structures)3L50   
SuperfamilyO60234
Peptide AtlasO60234
IPIIPI00028414   
Protein Interaction databases
DIP (DOE-UCLA)O60234
IntAct (EBI)O60234
BioGRIDGMFG
STRING (EMBL)GMFG
ZODIACGMFG
Ontologies - Pathways
QuickGOO60234
Ontology : AmiGOactin binding  protein kinase inhibitor activity  extracellular region  protein phosphorylation  negative regulation of protein kinase activity  enzyme activator activity  growth factor activity  negative regulation of Arp2/3 complex-mediated actin nucleation  secretory granule lumen  positive regulation of catalytic activity  neutrophil degranulation  actin filament debranching  Arp2/3 complex binding  ficolin-1-rich granule lumen  regulation of actin cytoskeleton reorganization  
Ontology : EGO-EBIactin binding  protein kinase inhibitor activity  extracellular region  protein phosphorylation  negative regulation of protein kinase activity  enzyme activator activity  growth factor activity  negative regulation of Arp2/3 complex-mediated actin nucleation  secretory granule lumen  positive regulation of catalytic activity  neutrophil degranulation  actin filament debranching  Arp2/3 complex binding  ficolin-1-rich granule lumen  regulation of actin cytoskeleton reorganization  
NDEx NetworkGMFG
Atlas of Cancer Signalling NetworkGMFG
Wikipedia pathwaysGMFG
Orthology - Evolution
OrthoDB9535
Phylogenetic Trees/Animal Genes : TreeFamGMFG
HOVERGENO60234
HOGENOMO60234
Homologs : HomoloGeneGMFG
Homology/Alignments : Family Browser (UCSC)GMFG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGMFG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GMFG
dbVarGMFG
ClinVarGMFG
1000_GenomesGMFG 
Exome Variant ServerGMFG
ExAC (Exome Aggregation Consortium)GMFG (select the gene name)
Genetic variants : HAPMAP9535
Genomic Variants (DGV)GMFG [DGVbeta]
DECIPHERGMFG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGMFG 
Mutations
ICGC Data PortalGMFG 
TCGA Data PortalGMFG 
Broad Tumor PortalGMFG
OASIS PortalGMFG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGMFG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGMFG
BioMutasearch GMFG
DgiDB (Drug Gene Interaction Database)GMFG
DoCM (Curated mutations)GMFG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GMFG (select a term)
intoGenGMFG
Cancer3DGMFG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604104   
Orphanet
MedgenGMFG
Genetic Testing Registry GMFG
NextProtO60234 [Medical]
TSGene9535
GENETestsGMFG
Huge Navigator GMFG [HugePedia]
snp3D : Map Gene to Disease9535
BioCentury BCIQGMFG
ClinGenGMFG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9535
Chemical/Pharm GKB GenePA28759
Clinical trialGMFG
Miscellaneous
canSAR (ICR)GMFG (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGMFG
EVEXGMFG
GoPubMedGMFG
iHOPGMFG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:17:26 CEST 2017

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