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GMIP (GEM interacting protein)

Identity

Alias_symbol (synonym)ARHGAP46
Other alias
HGNC (Hugo) GMIP
LocusID (NCBI) 51291
Atlas_Id 63854
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19629473 and ends at 19643667 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GMIP (19p13.11) / SLC6A9 (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GMIP   24852
Cards
Entrez_Gene (NCBI)GMIP  51291  GEM interacting protein
AliasesARHGAP46
GeneCards (Weizmann)GMIP
Ensembl hg19 (Hinxton)ENSG00000089639 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089639 [Gene_View]  chr19:19629473-19643667 [Contig_View]  GMIP [Vega]
ICGC DataPortalENSG00000089639
TCGA cBioPortalGMIP
AceView (NCBI)GMIP
Genatlas (Paris)GMIP
WikiGenes51291
SOURCE (Princeton)GMIP
Genetics Home Reference (NIH)GMIP
Genomic and cartography
GoldenPath hg38 (UCSC)GMIP  -     chr19:19629473-19643667 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GMIP  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblGMIP - 19p13.11 [CytoView hg19]  GMIP - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIGMIP [Mapview hg19]  GMIP [Mapview hg38]
OMIM609694   
Gene and transcription
Genbank (Entrez)AF086104 AF132541 AI073975 AK297220 BC032057
RefSeq transcript (Entrez)NM_001288998 NM_001288999 NM_016573
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GMIP
Cluster EST : UnigeneHs.49427 [ NCBI ]
CGAP (NCI)Hs.49427
Alternative Splicing GalleryENSG00000089639
Gene ExpressionGMIP [ NCBI-GEO ]   GMIP [ EBI - ARRAY_EXPRESS ]   GMIP [ SEEK ]   GMIP [ MEM ]
Gene Expression Viewer (FireBrowse)GMIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51291
GTEX Portal (Tissue expression)GMIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P107   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P107  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P107
Splice isoforms : SwissVarQ9P107
PhosPhoSitePlusQ9P107
Domaine pattern : Prosite (Expaxy)F_BAR (PS51741)    RHOGAP (PS50238)    ZF_DAG_PE_1 (PS00479)    ZF_DAG_PE_2 (PS50081)   
Domains : Interpro (EBI)F_BAR    PE/DAG-bd    Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)C1 (SM00109)  RhoGAP (SM00324)  
Conserved Domain (NCBI)GMIP
DMDM Disease mutations51291
Blocks (Seattle)GMIP
PDB (SRS)3QWE   
PDB (PDBSum)3QWE   
PDB (IMB)3QWE   
PDB (RSDB)3QWE   
Structural Biology KnowledgeBase3QWE   
SCOP (Structural Classification of Proteins)3QWE   
CATH (Classification of proteins structures)3QWE   
SuperfamilyQ9P107
Human Protein AtlasENSG00000089639
Peptide AtlasQ9P107
HPRD11005
IPIIPI00292376   IPI00908864   
Protein Interaction databases
DIP (DOE-UCLA)Q9P107
IntAct (EBI)Q9P107
FunCoupENSG00000089639
BioGRIDGMIP
STRING (EMBL)GMIP
ZODIACGMIP
Ontologies - Pathways
QuickGOQ9P107
Ontology : AmiGOGTPase activator activity  GTPase activator activity  protein binding  intracellular  nucleoplasm  cytosol  cytosol  plasma membrane  negative regulation of GTPase activity  intracellular signal transduction  positive regulation of GTPase activity  metal ion binding  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  GTPase activator activity  protein binding  intracellular  nucleoplasm  cytosol  cytosol  plasma membrane  negative regulation of GTPase activity  intracellular signal transduction  positive regulation of GTPase activity  metal ion binding  regulation of small GTPase mediated signal transduction  
NDEx NetworkGMIP
Atlas of Cancer Signalling NetworkGMIP
Wikipedia pathwaysGMIP
Orthology - Evolution
OrthoDB51291
GeneTree (enSembl)ENSG00000089639
Phylogenetic Trees/Animal Genes : TreeFamGMIP
HOVERGENQ9P107
HOGENOMQ9P107
Homologs : HomoloGeneGMIP
Homology/Alignments : Family Browser (UCSC)GMIP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGMIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GMIP
dbVarGMIP
ClinVarGMIP
1000_GenomesGMIP 
Exome Variant ServerGMIP
ExAC (Exome Aggregation Consortium)GMIP (select the gene name)
Genetic variants : HAPMAP51291
Genomic Variants (DGV)GMIP [DGVbeta]
DECIPHERGMIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGMIP 
Mutations
ICGC Data PortalGMIP 
TCGA Data PortalGMIP 
Broad Tumor PortalGMIP
OASIS PortalGMIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGMIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGMIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GMIP
DgiDB (Drug Gene Interaction Database)GMIP
DoCM (Curated mutations)GMIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GMIP (select a term)
intoGenGMIP
Cancer3DGMIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609694   
Orphanet
MedgenGMIP
Genetic Testing Registry GMIP
NextProtQ9P107 [Medical]
TSGene51291
GENETestsGMIP
Target ValidationGMIP
Huge Navigator GMIP [HugePedia]
snp3D : Map Gene to Disease51291
BioCentury BCIQGMIP
ClinGenGMIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51291
Chemical/Pharm GKB GenePA134963566
Clinical trialGMIP
Miscellaneous
canSAR (ICR)GMIP (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGMIP
EVEXGMIP
GoPubMedGMIP
iHOPGMIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:31 CEST 2017

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