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GML (glycosylphosphatidylinositol anchored molecule like)

Identity

Alias_namesGPI anchored molecule like protein
glycosylphosphatidylinositol anchored molecule like protein
Alias_symbol (synonym)LY6DL
Other alias
HGNC (Hugo) GML
LocusID (NCBI) 2765
Atlas_Id 40724
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 142834801 and ends at 142846846 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GML (8q24.3) / CPQ (8q22.1)GML (8q24.3) / ERICH5 (8q22.2)GML 8q24.3 C8orf47

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GML   4375
Cards
Entrez_Gene (NCBI)GML  2765  glycosylphosphatidylinositol anchored molecule like
AliasesLY6DL
GeneCards (Weizmann)GML
Ensembl hg19 (Hinxton)ENSG00000104499 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104499 [Gene_View]  chr8:142834801-142846846 [Contig_View]  GML [Vega]
ICGC DataPortalENSG00000104499
TCGA cBioPortalGML
AceView (NCBI)GML
Genatlas (Paris)GML
WikiGenes2765
SOURCE (Princeton)GML
Genetics Home Reference (NIH)GML
Genomic and cartography
GoldenPath hg38 (UCSC)GML  -     chr8:142834801-142846846 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GML  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblGML - 8q24.3 [CytoView hg19]  GML - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIGML [Mapview hg19]  GML [Mapview hg38]
OMIM602370   
Gene and transcription
Genbank (Entrez)BC074930 BC126336 BC126338 D84290 HQ258064
RefSeq transcript (Entrez)NM_002066
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GML
Cluster EST : UnigeneHs.661218 [ NCBI ]
CGAP (NCI)Hs.661218
Alternative Splicing GalleryENSG00000104499
Gene ExpressionGML [ NCBI-GEO ]   GML [ EBI - ARRAY_EXPRESS ]   GML [ SEEK ]   GML [ MEM ]
Gene Expression Viewer (FireBrowse)GML [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2765
GTEX Portal (Tissue expression)GML
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99445   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99445  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99445
Splice isoforms : SwissVarQ99445
PhosPhoSitePlusQ99445
Domaine pattern : Prosite (Expaxy)LY6_UPAR (PS00983)   
Domains : Interpro (EBI)CD59_antigen_CS    LY6_UPA_recep-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LU (SM00134)  
Conserved Domain (NCBI)GML
DMDM Disease mutations2765
Blocks (Seattle)GML
SuperfamilyQ99445
Human Protein AtlasENSG00000104499
Peptide AtlasQ99445
HPRD03844
IPIIPI00015283   IPI00974090   
Protein Interaction databases
DIP (DOE-UCLA)Q99445
IntAct (EBI)Q99445
FunCoupENSG00000104499
BioGRIDGML
STRING (EMBL)GML
ZODIACGML
Ontologies - Pathways
QuickGOQ99445
Ontology : AmiGOintracellular  plasma membrane  apoptotic process  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  negative regulation of cell proliferation  extrinsic component of membrane  anchored component of membrane  
Ontology : EGO-EBIintracellular  plasma membrane  apoptotic process  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  negative regulation of cell proliferation  extrinsic component of membrane  anchored component of membrane  
NDEx NetworkGML
Atlas of Cancer Signalling NetworkGML
Wikipedia pathwaysGML
Orthology - Evolution
OrthoDB2765
GeneTree (enSembl)ENSG00000104499
Phylogenetic Trees/Animal Genes : TreeFamGML
HOVERGENQ99445
HOGENOMQ99445
Homologs : HomoloGeneGML
Homology/Alignments : Family Browser (UCSC)GML
Gene fusions - Rearrangements
Fusion : MitelmanGML/CPQ [8q24.3/8q22.1]  
Fusion: TCGAGML 8q24.3 C8orf47 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGML [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GML
dbVarGML
ClinVarGML
1000_GenomesGML 
Exome Variant ServerGML
ExAC (Exome Aggregation Consortium)GML (select the gene name)
Genetic variants : HAPMAP2765
Genomic Variants (DGV)GML [DGVbeta]
DECIPHERGML [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGML 
Mutations
ICGC Data PortalGML 
TCGA Data PortalGML 
Broad Tumor PortalGML
OASIS PortalGML [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGML  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGML
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GML
DgiDB (Drug Gene Interaction Database)GML
DoCM (Curated mutations)GML (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GML (select a term)
intoGenGML
Cancer3DGML(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602370   
Orphanet
MedgenGML
Genetic Testing Registry GML
NextProtQ99445 [Medical]
TSGene2765
GENETestsGML
Target ValidationGML
Huge Navigator GML [HugePedia]
snp3D : Map Gene to Disease2765
BioCentury BCIQGML
ClinGenGML
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2765
Chemical/Pharm GKB GenePA28760
Clinical trialGML
Miscellaneous
canSAR (ICR)GML (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGML
EVEXGML
GoPubMedGML
iHOPGML
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Aug 1 17:02:09 CEST 2017

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