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GMPPA (GDP-mannose pyrophosphorylase A)

Identity

Other aliasAAMR
HGNC (Hugo) GMPPA
LocusID (NCBI) 29926
Atlas_Id 63856
Location 2q35  [Link to chromosome band 2q35]
Location_base_pair Starts at 220363587 and ends at 220371718 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GMPPA   22923
Cards
Entrez_Gene (NCBI)GMPPA  29926  GDP-mannose pyrophosphorylase A
AliasesAAMR
GeneCards (Weizmann)GMPPA
Ensembl hg19 (Hinxton)ENSG00000144591 [Gene_View]  chr2:220363587-220371718 [Contig_View]  GMPPA [Vega]
Ensembl hg38 (Hinxton)ENSG00000144591 [Gene_View]  chr2:220363587-220371718 [Contig_View]  GMPPA [Vega]
ICGC DataPortalENSG00000144591
TCGA cBioPortalGMPPA
AceView (NCBI)GMPPA
Genatlas (Paris)GMPPA
WikiGenes29926
SOURCE (Princeton)GMPPA
Genetics Home Reference (NIH)GMPPA
Genomic and cartography
GoldenPath hg19 (UCSC)GMPPA  -     chr2:220363587-220371718 +  2q35   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GMPPA  -     2q35   [Description]    (hg38-Dec_2013)
EnsemblGMPPA - 2q35 [CytoView hg19]  GMPPA - 2q35 [CytoView hg38]
Mapping of homologs : NCBIGMPPA [Mapview hg19]  GMPPA [Mapview hg38]
OMIM615495   615510   
Gene and transcription
Genbank (Entrez)AB209592 AF135422 AK000999 AK022578 AK222951
RefSeq transcript (Entrez)NM_013335 NM_205847
RefSeq genomic (Entrez)NC_000002 NC_018913 NG_033833 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)GMPPA
Cluster EST : UnigeneHs.27059 [ NCBI ]
CGAP (NCI)Hs.27059
Alternative Splicing GalleryENSG00000144591
Gene ExpressionGMPPA [ NCBI-GEO ]   GMPPA [ EBI - ARRAY_EXPRESS ]   GMPPA [ SEEK ]   GMPPA [ MEM ]
Gene Expression Viewer (FireBrowse)GMPPA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29926
GTEX Portal (Tissue expression)GMPPA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IJ6
Splice isoforms : SwissVarQ96IJ6
PhosPhoSitePlusQ96IJ6
Domaine pattern : Prosite (Expaxy)HEXAPEP_TRANSFERASES (PS00101)   
Domains : Interpro (EBI)Hexapep_transf    Hexapep_transf_CS    NTP_transferase    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Hexapep (PF00132)    NTP_transferase (PF00483)   
Domain families : Pfam (NCBI)pfam00132    pfam00483   
Conserved Domain (NCBI)GMPPA
DMDM Disease mutations29926
Blocks (Seattle)GMPPA
SuperfamilyQ96IJ6
Human Protein AtlasENSG00000144591
Peptide AtlasQ96IJ6
HPRD13588
IPIIPI00101782   IPI00657888   IPI00555671   IPI00657652   IPI00893044   IPI00383767   
Protein Interaction databases
DIP (DOE-UCLA)Q96IJ6
IntAct (EBI)Q96IJ6
FunCoupENSG00000144591
BioGRIDGMPPA
STRING (EMBL)GMPPA
ZODIACGMPPA
Ontologies - Pathways
QuickGOQ96IJ6
Ontology : AmiGOprotein binding  cytoplasm  dolichol-linked oligosaccharide biosynthetic process  GDP-mannose biosynthetic process  nucleotidyltransferase activity  protein N-linked glycosylation via asparagine  post-translational protein modification  cellular protein metabolic process  extracellular exosome  
Ontology : EGO-EBIprotein binding  cytoplasm  dolichol-linked oligosaccharide biosynthetic process  GDP-mannose biosynthetic process  nucleotidyltransferase activity  protein N-linked glycosylation via asparagine  post-translational protein modification  cellular protein metabolic process  extracellular exosome  
Pathways : KEGGFructose and mannose metabolism    Amino sugar and nucleotide sugar metabolism   
NDEx NetworkGMPPA
Atlas of Cancer Signalling NetworkGMPPA
Wikipedia pathwaysGMPPA
Orthology - Evolution
OrthoDB29926
GeneTree (enSembl)ENSG00000144591
Phylogenetic Trees/Animal Genes : TreeFamGMPPA
HOVERGENQ96IJ6
HOGENOMQ96IJ6
Homologs : HomoloGeneGMPPA
Homology/Alignments : Family Browser (UCSC)GMPPA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGMPPA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GMPPA
dbVarGMPPA
ClinVarGMPPA
1000_GenomesGMPPA 
Exome Variant ServerGMPPA
ExAC (Exome Aggregation Consortium)GMPPA (select the gene name)
Genetic variants : HAPMAP29926
Genomic Variants (DGV)GMPPA [DGVbeta]
DECIPHER (Syndromes)2:220363587-220371718  ENSG00000144591
CONAN: Copy Number AnalysisGMPPA 
Mutations
ICGC Data PortalGMPPA 
TCGA Data PortalGMPPA 
Broad Tumor PortalGMPPA
OASIS PortalGMPPA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGMPPA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGMPPA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GMPPA
DgiDB (Drug Gene Interaction Database)GMPPA
DoCM (Curated mutations)GMPPA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GMPPA (select a term)
intoGenGMPPA
Cancer3DGMPPA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615495    615510   
Orphanet1253   
MedgenGMPPA
Genetic Testing Registry GMPPA
NextProtQ96IJ6 [Medical]
TSGene29926
GENETestsGMPPA
Huge Navigator GMPPA [HugePedia]
snp3D : Map Gene to Disease29926
BioCentury BCIQGMPPA
ClinGenGMPPA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29926
Chemical/Pharm GKB GenePA134925506
Clinical trialGMPPA
Miscellaneous
canSAR (ICR)GMPPA (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGMPPA
EVEXGMPPA
GoPubMedGMPPA
iHOPGMPPA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:06:20 CET 2017

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