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GNAT1 (guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1)

Identity

Other namesCSNBAD3
GBT1
GNATR
HGNC (Hugo) GNAT1
LocusID (NCBI) 2779
Location 3p21.31
Location_base_pair Starts at 50229043 and ends at 50235129 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GNAT1   4393
Cards
Entrez_Gene (NCBI)GNAT1  2779  guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1
GeneCards (Weizmann)GNAT1
Ensembl (Hinxton) [Gene_View]  chr3:50229043-50235129 [Contig_View]  GNAT1 [Vega]
AceView (NCBI)GNAT1
Genatlas (Paris)GNAT1
WikiGenes2779
SOURCE (Princeton)NM_000172 NM_144499
Genomic and cartography
GoldenPath (UCSC)GNAT1  -  3p21.31   chr3:50229043-50235129 +  3p21.31   [Description]    (hg19-Feb_2009)
EnsemblGNAT1 - 3p21.31 [CytoView]
Mapping of homologs : NCBIGNAT1 [Mapview]
OMIM139330   610444   
Gene and transcription
Genbank (Entrez)AF493908 BC095505 BQ637667 BU727496 BU728210
RefSeq transcript (Entrez)NM_000172 NM_144499
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NG_009831 NT_022517 NW_001838877 NW_004929309
Consensus coding sequences : CCDS (NCBI)GNAT1
Cluster EST : UnigeneHs.517978 [ NCBI ]
CGAP (NCI)Hs.517978
Alternative Splicing : Fast-db (Paris)GSHG0020815
Gene ExpressionGNAT1 [ NCBI-GEO ]     GNAT1 [ SEEK ]   GNAT1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP11488 (Uniprot)
NextProtP11488  [Medical]
With graphics : InterProP11488
Splice isoforms : SwissVarP11488 (Swissvar)
Domains : Interpro (EBI)Gprotein_alpha_I    Gprotein_alpha_su    GproteinA_insert    P-loop_NTPase   
Related proteins : CluSTrP11488
Domain families : Pfam (Sanger)G-alpha (PF00503)   
Domain families : Pfam (NCBI)pfam00503   
Domain families : Smart (EMBL)G_alpha (SM00275)  
DMDM Disease mutations2779
Blocks (Seattle)P11488
PDB (SRS)3RBQ   
PDB (PDBSum)3RBQ   
PDB (IMB)3RBQ   
PDB (RSDB)3RBQ   
Peptide AtlasP11488
HPRD08850
IPIIPI00218488   IPI00925584   
Protein Interaction databases
DIP (DOE-UCLA)P11488
IntAct (EBI)P11488
BioGRIDGNAT1
InParanoidP11488
Interologous Interaction database P11488
IntegromeDBGNAT1
STRING (EMBL)GNAT1
Ontologies - Pathways
Ontology : AmiGOacyl binding  detection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor binding  photoreceptor outer segment  photoreceptor inner segment  GTPase activity  GTPase activity  signal transducer activity  GTP binding  cytosol  heterotrimeric G-protein complex  plasma membrane  GTP catabolic process  signal transduction  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  visual perception  phototransduction, visible light  phototransduction, visible light  cell proliferation  response to light stimulus  response to light intensity  membrane  rhodopsin mediated signaling pathway  apical plasma membrane  GDP binding  protein kinase binding  regulation of rhodopsin mediated signaling pathway  G-protein beta/gamma-subunit complex binding  photoreceptor connecting cilium  eye photoreceptor cell development  photoreceptor outer segment membrane  neuronal cell body  metal ion binding  detection of light stimulus involved in visual perception  sensory perception of umami taste  positive regulation of cyclic-nucleotide phosphodiesterase activity  negative regulation of cyclic-nucleotide phosphodiesterase activity  retina development in camera-type eye  cellular response to electrical stimulus  photoreceptor disc membrane  
Ontology : EGO-EBIacyl binding  detection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor binding  photoreceptor outer segment  photoreceptor inner segment  GTPase activity  GTPase activity  signal transducer activity  GTP binding  cytosol  heterotrimeric G-protein complex  plasma membrane  GTP catabolic process  signal transduction  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  visual perception  phototransduction, visible light  phototransduction, visible light  cell proliferation  response to light stimulus  response to light intensity  membrane  rhodopsin mediated signaling pathway  apical plasma membrane  GDP binding  protein kinase binding  regulation of rhodopsin mediated signaling pathway  G-protein beta/gamma-subunit complex binding  photoreceptor connecting cilium  eye photoreceptor cell development  photoreceptor outer segment membrane  neuronal cell body  metal ion binding  detection of light stimulus involved in visual perception  sensory perception of umami taste  positive regulation of cyclic-nucleotide phosphodiesterase activity  negative regulation of cyclic-nucleotide phosphodiesterase activity  retina development in camera-type eye  cellular response to electrical stimulus  photoreceptor disc membrane  
Pathways : KEGGPhototransduction   
Protein Interaction DatabaseGNAT1
Wikipedia pathwaysGNAT1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GNAT1
SNP (GeneSNP Utah)GNAT1
SNP : HGBaseGNAT1
Genetic variants : HAPMAPGNAT1
1000_GenomesGNAT1 
CONAN: Copy Number AnalysisGNAT1 
Somatic Mutations in Cancer : COSMICGNAT1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
Mutations and Diseases : HGMDGNAT1
OMIM139330    610444   
MedgenGNAT1
GENETestsGNAT1
Disease Genetic AssociationGNAT1
Huge Navigator GNAT1 [HugePedia]  GNAT1 [HugeCancerGEM]
Genomic VariantsGNAT1  GNAT1 [DGVbeta]
Exome VariantGNAT1
dbVarGNAT1
ClinVarGNAT1
snp3D : Map Gene to Disease2779
General knowledge
Homologs : HomoloGeneGNAT1
Homology/Alignments : Family Browser (UCSC)GNAT1
Phylogenetic Trees/Animal Genes : TreeFamGNAT1
Chemical/Protein Interactions : CTD2779
Chemical/Pharm GKB GenePA28773
Clinical trialGNAT1
Other databases
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
CoreMineGNAT1
iHOPGNAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:48:38 CEST 2014

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