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GNAT2 (guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2)

Identity

Other namesACHM4
GNATC
HGNC (Hugo) GNAT2
LocusID (NCBI) 2780
Location 1p13.3
Location_base_pair Starts at 110145889 and ends at 110155705 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GNAT2   4394
Cards
Entrez_Gene (NCBI)GNAT2  2780  guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2
GeneCards (Weizmann)GNAT2
Ensembl (Hinxton)ENSG00000134183 [Gene_View]  chr1:110145889-110155705 [Contig_View]  GNAT2 [Vega]
AceView (NCBI)GNAT2
Genatlas (Paris)GNAT2
WikiGenes2780
SOURCE (Princeton)NM_005272
Genomic and cartography
GoldenPath (UCSC)GNAT2  -  1p13.3   chr1:110145889-110155705 -  1p13.3   [Description]    (hg19-Feb_2009)
EnsemblGNAT2 - 1p13.3 [CytoView]
Mapping of homologs : NCBIGNAT2 [Mapview]
OMIM139340   613856   
Gene and transcription
Genbank (Entrez)AF493909 BC000233 BT009844 DQ892860 DQ896109
RefSeq transcript (Entrez)NM_005272
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_009099 NT_032977 NW_001838594 NW_004929290
Consensus coding sequences : CCDS (NCBI)GNAT2
Cluster EST : UnigeneHs.36973 [ NCBI ]
CGAP (NCI)Hs.36973
Alternative Splicing : Fast-db (Paris)GSHG0002329
Alternative Splicing GalleryENSG00000134183
Gene ExpressionGNAT2 [ NCBI-GEO ]     GNAT2 [ SEEK ]   GNAT2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP19087 (Uniprot)
NextProtP19087  [Medical]
With graphics : InterProP19087
Splice isoforms : SwissVarP19087 (Swissvar)
Domains : Interpro (EBI)Gprotein_alpha_I    Gprotein_alpha_su    GproteinA_insert    P-loop_NTPase   
Related proteins : CluSTrP19087
Domain families : Pfam (Sanger)G-alpha (PF00503)   
Domain families : Pfam (NCBI)pfam00503   
Domain families : Smart (EMBL)G_alpha (SM00275)  
DMDM Disease mutations2780
Blocks (Seattle)P19087
Human Protein AtlasENSG00000134183
Peptide AtlasP19087
HPRD00762
IPIIPI00217269   
Protein Interaction databases
DIP (DOE-UCLA)P19087
IntAct (EBI)P19087
FunCoupENSG00000134183
BioGRIDGNAT2
InParanoidP19087
Interologous Interaction database P19087
IntegromeDBGNAT2
STRING (EMBL)GNAT2
Ontologies - Pathways
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor binding  photoreceptor outer segment  photoreceptor outer segment  photoreceptor inner segment  GTPase activity  signal transducer activity  GTP binding  heterotrimeric G-protein complex  heterotrimeric G-protein complex  plasma membrane  G-protein coupled receptor signaling pathway  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  positive regulation of cytosolic calcium ion concentration  visual perception  phototransduction  G-protein coupled photoreceptor activity  response to light intensity  extrinsic to cytoplasmic side of plasma membrane  G-protein beta/gamma-subunit complex binding  photoreceptor outer segment membrane  retinal cone cell development  metal ion binding  detection of light stimulus involved in visual perception  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  G-protein coupled receptor binding  photoreceptor outer segment  photoreceptor outer segment  photoreceptor inner segment  GTPase activity  signal transducer activity  GTP binding  heterotrimeric G-protein complex  heterotrimeric G-protein complex  plasma membrane  G-protein coupled receptor signaling pathway  adenylate cyclase-modulating G-protein coupled receptor signaling pathway  positive regulation of cytosolic calcium ion concentration  visual perception  phototransduction  G-protein coupled photoreceptor activity  response to light intensity  extrinsic to cytoplasmic side of plasma membrane  G-protein beta/gamma-subunit complex binding  photoreceptor outer segment membrane  retinal cone cell development  metal ion binding  detection of light stimulus involved in visual perception  
Pathways : KEGGPhototransduction   
REACTOMEGNAT2
Protein Interaction DatabaseGNAT2
Wikipedia pathwaysGNAT2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GNAT2
SNP (GeneSNP Utah)GNAT2
SNP : HGBaseGNAT2
Genetic variants : HAPMAPGNAT2
1000_GenomesGNAT2 
ICGC programENSG00000134183 
Somatic Mutations in Cancer : COSMICGNAT2 
CONAN: Copy Number AnalysisGNAT2 
Mutations and Diseases : HGMDGNAT2
OMIM139340    613856   
GENETestsGNAT2
Disease Genetic AssociationGNAT2
Huge Navigator GNAT2 [HugePedia]  GNAT2 [HugeCancerGEM]
Genomic VariantsGNAT2  GNAT2 [DGVbeta]
Exome VariantGNAT2
dbVarGNAT2
ClinVarGNAT2
snp3D : Map Gene to Disease2780
General knowledge
Homologs : HomoloGeneGNAT2
Homology/Alignments : Family Browser (UCSC)GNAT2
Phylogenetic Trees/Animal Genes : TreeFamGNAT2
Chemical/Protein Interactions : CTD2780
Chemical/Pharm GKB GenePA28774
Clinical trialGNAT2
Cancer Resource (Charite)ENSG00000134183
Other databases
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
CoreMineGNAT2
iHOPGNAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 16:46:00 CEST 2014

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