Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GNB4 (guanine nucleotide binding protein (G protein), beta polypeptide 4)

Identity

Other namesCMTD1F
HGNC (Hugo) GNB4
LocusID (NCBI) 59345
Location 3q26.33
Location_base_pair Starts at 179113876 and ends at 179169371 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GNB4   20731
Entrez_Gene (NCBI)GNB4  59345  guanine nucleotide binding protein (G protein), beta polypeptide 4
Cards
GeneCards (Weizmann)GNB4
Ensembl (Hinxton) [Gene_View]  chr3:179113876-179169371 [Contig_View]  GNB4 [Vega]
AceView (NCBI)GNB4
Genatlas (Paris)GNB4
SOURCE (Stanford)NM_021629
Genomic and cartography
GoldenPath (UCSC)GNB4  -  3q26.33   chr3:179113876-179169371 -  3q26.33   [Description]    (hg19-Feb_2009)
EnsemblGNB4 - 3q26.33 [CytoView]
Mapping of homologs : NCBIGNB4 [Mapview]
OMIM610863   615185   
Gene and transcription
Genbank (Entrez)AF300648 AK001890 AK022599 AK091332 AK290571
RefSeq transcript (SRS)NM_021629
RefSeq transcript (Entrez)NM_021629
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NG_033163 NT_005612 NW_001838884 NW_004078013
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NG_033163 NT_005612 NW_001838884 NW_004078013
Consensus coding sequences : CCDS (NCBI)GNB4
Cluster EST : UnigeneHs.173030 [ SRS ] Hs.173030 [ NCBI ]
CGAP (NCI)Hs.173030
Alternative Splicing : Fast-db (Paris)GSHG0022256
Gene ExpressionGNB4 [ NCBI-GEO ]   GNB4 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HAV0 (SRS) Q9HAV0 (Uniprot)
NextProtQ9HAV0
With graphics : InterProQ9HAV0
Splice isoforms : SwissVarQ9HAV0(Swissvar)
Domaine pattern : Prosite (SRS)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (SRS)G-protein_beta_WD-40_rep    Gprotein_B    Guanine_nucleotide-bd_bsu    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Domains : Interpro (EBI)G-protein_beta_WD-40_rep    Gprotein_B    Guanine_nucleotide-bd_bsu    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_CS    WD40_repeat_dom   
Related proteins : CluSTrQ9HAV0
Domain families : Pfam (SRS)WD40 (PF00400)   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
DMDM59345
Blocks (Seattle)Q9HAV0
HPRD09973
IPIIPI00012451   IPI00946384   IPI00946201   
Protein Interaction databases
DIP (DOE-UCLA)Q9HAV0
IntAct (EBI)Q9HAV0
REACTOMEGNB4
Protein Interaction Database59345
BioGRIDGNB4
InParanoidQ9HAV0
Interologous Interaction database Q9HAV0
IntegromeDBGNB4
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GNB4
SNP (GeneSNP Utah)GNB4
SNP : HGBaseGNB4
Genetic variants : HAPMAPGNB4
Somatic Mutations in Cancer : COSMICGNB4 
CONAN: Copy Number AnalysisGNB4 
Mutations and Diseases : HGMDGNB4
OMIM610863    615185   
GENETests610863    615185   
Disease Genetic AssociationGNB4
Huge Navigator GNB4 [HugePedia]  GNB4 [HugeCancerGEM]
Genomic VariantsGNB4  GNB4 [DGVbeta]
ClinVarGNB4
snp3D : Map Gene to Disease59345
General knowledge
Homologs : HomoloGeneGNB4
Homology/Alignments : Family Browser (UCSC)GNB4
Phylogenetic Trees/Animal Genes : TreeFamGNB4
Chemical/Protein Interactions : CTD59345
Chemical/Pharm GKB GenePA134864200
Clinical trialGNB4
Ontology : AmiGOsignal transducer activity  plasma membrane  energy reserve metabolic process  small molecule metabolic process  cellular response to glucagon stimulus  
Ontology : EGO-EBIsignal transducer activity  plasma membrane  energy reserve metabolic process  small molecule metabolic process  cellular response to glucagon stimulus  
Other databases
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
PubGeneGNB4
iHOPGNB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:37:57 CEST 2013
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