Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GNL1 (G protein nucleolar 1 (putative))

Identity

Alias_namesguanine nucleotide binding protein-like 1
Alias_symbol (synonym)HSR1
Other alias
HGNC (Hugo) GNL1
LocusID (NCBI) 2794
Atlas_Id 52669
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 30541378 and ends at 30557594 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GNL1 (6p21.33) / FLOT1 (6p21.33)GNL1 (6p21.33) / GNL1 (6p21.33)HK1 (10q22.1) / GNL1 (6p21.33)
NCKAP5L (12q13.12) / GNL1 (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GNL1   4413
Cards
Entrez_Gene (NCBI)GNL1  2794  G protein nucleolar 1 (putative)
AliasesHSR1
GeneCards (Weizmann)GNL1
Ensembl hg19 (Hinxton)ENSG00000204590 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204590 [Gene_View]  ENSG00000204590 [Sequence]  chr6:30541378-30557594 [Contig_View]  GNL1 [Vega]
ICGC DataPortalENSG00000204590
TCGA cBioPortalGNL1
AceView (NCBI)GNL1
Genatlas (Paris)GNL1
WikiGenes2794
SOURCE (Princeton)GNL1
Genetics Home Reference (NIH)GNL1
Genomic and cartography
GoldenPath hg38 (UCSC)GNL1  -     chr6:30541378-30557594 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GNL1  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblGNL1 - 6p21.33 [CytoView hg19]  GNL1 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIGNL1 [Mapview hg19]  GNL1 [Mapview hg38]
OMIM143024   
Gene and transcription
Genbank (Entrez)AI433804 AK026391 AK095071 AK293596 AK298042
RefSeq transcript (Entrez)NM_005275
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)GNL1
Cluster EST : UnigeneHs.118354 [ NCBI ]
CGAP (NCI)Hs.118354
Alternative Splicing GalleryENSG00000204590
Gene ExpressionGNL1 [ NCBI-GEO ]   GNL1 [ EBI - ARRAY_EXPRESS ]   GNL1 [ SEEK ]   GNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)GNL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2794
GTEX Portal (Tissue expression)GNL1
Human Protein AtlasENSG00000204590-GNL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP36915   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP36915  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP36915
Splice isoforms : SwissVarP36915
PhosPhoSitePlusP36915
Domaine pattern : Prosite (Expaxy)G_CP (PS51721)   
Domains : Interpro (EBI)G_CP_dom    GTP_binding_domain    P-loop_NTPase   
Domain families : Pfam (Sanger)MMR_HSR1 (PF01926)   
Domain families : Pfam (NCBI)pfam01926   
Conserved Domain (NCBI)GNL1
DMDM Disease mutations2794
Blocks (Seattle)GNL1
SuperfamilyP36915
Human Protein Atlas [tissue]ENSG00000204590-GNL1 [tissue]
Peptide AtlasP36915
HPRD00879
IPIIPI00396387   IPI00479495   IPI00893424   IPI00908311   IPI01018879   IPI00384745   IPI00892665   
Protein Interaction databases
DIP (DOE-UCLA)P36915
IntAct (EBI)P36915
FunCoupENSG00000204590
BioGRIDGNL1
STRING (EMBL)GNL1
ZODIACGNL1
Ontologies - Pathways
QuickGOP36915
Ontology : AmiGOT cell mediated immunity  structural molecule activity  GTP binding  extracellular space  nucleus  cellular response to DNA damage stimulus  signal transduction  
Ontology : EGO-EBIT cell mediated immunity  structural molecule activity  GTP binding  extracellular space  nucleus  cellular response to DNA damage stimulus  signal transduction  
NDEx NetworkGNL1
Atlas of Cancer Signalling NetworkGNL1
Wikipedia pathwaysGNL1
Orthology - Evolution
OrthoDB2794
GeneTree (enSembl)ENSG00000204590
Phylogenetic Trees/Animal Genes : TreeFamGNL1
HOVERGENP36915
HOGENOMP36915
Homologs : HomoloGeneGNL1
Homology/Alignments : Family Browser (UCSC)GNL1
Gene fusions - Rearrangements
Fusion : QuiverGNL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGNL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GNL1
dbVarGNL1
ClinVarGNL1
1000_GenomesGNL1 
Exome Variant ServerGNL1
ExAC (Exome Aggregation Consortium)ENSG00000204590
GNOMAD BrowserENSG00000204590
Varsome BrowserGNL1
Genetic variants : HAPMAP2794
Genomic Variants (DGV)GNL1 [DGVbeta]
DECIPHERGNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGNL1 
Mutations
ICGC Data PortalGNL1 
TCGA Data PortalGNL1 
Broad Tumor PortalGNL1
OASIS PortalGNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GNL1
DgiDB (Drug Gene Interaction Database)GNL1
DoCM (Curated mutations)GNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GNL1 (select a term)
intoGenGNL1
Cancer3DGNL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM143024   
Orphanet
DisGeNETGNL1
MedgenGNL1
Genetic Testing Registry GNL1
NextProtP36915 [Medical]
TSGene2794
GENETestsGNL1
Target ValidationGNL1
Huge Navigator GNL1 [HugePedia]
snp3D : Map Gene to Disease2794
BioCentury BCIQGNL1
ClinGenGNL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2794
Chemical/Pharm GKB GenePA28792
Clinical trialGNL1
Miscellaneous
canSAR (ICR)GNL1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGNL1
EVEXGNL1
GoPubMedGNL1
iHOPGNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:08:56 CET 2018

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