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GNL3L (G protein nucleolar 3 like)

Identity

Alias_namesguanine nucleotide binding protein-like 3 (nucleolar)-like
Alias_symbol (synonym)FLJ10613
GNL3B
Other alias
HGNC (Hugo) GNL3L
LocusID (NCBI) 54552
Atlas_Id 56386
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 54530211 and ends at 54567287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNL3L (Xp11.22) / GNL3L (Xp11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GNL3L   25553
Cards
Entrez_Gene (NCBI)GNL3L  54552  G protein nucleolar 3 like
AliasesGNL3B
GeneCards (Weizmann)GNL3L
Ensembl hg19 (Hinxton)ENSG00000130119 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130119 [Gene_View]  chrX:54530211-54567287 [Contig_View]  GNL3L [Vega]
ICGC DataPortalENSG00000130119
TCGA cBioPortalGNL3L
AceView (NCBI)GNL3L
Genatlas (Paris)GNL3L
WikiGenes54552
SOURCE (Princeton)GNL3L
Genetics Home Reference (NIH)GNL3L
Genomic and cartography
GoldenPath hg38 (UCSC)GNL3L  -     chrX:54530211-54567287 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GNL3L  -     Xp11.22   [Description]    (hg19-Feb_2009)
EnsemblGNL3L - Xp11.22 [CytoView hg19]  GNL3L - Xp11.22 [CytoView hg38]
Mapping of homologs : NCBIGNL3L [Mapview hg19]  GNL3L [Mapview hg38]
OMIM300873   
Gene and transcription
Genbank (Entrez)AK001475 AK022325 AK128277 BC003603 BC011720
RefSeq transcript (Entrez)NM_001184819 NM_019067
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GNL3L
Cluster EST : UnigeneHs.654677 [ NCBI ]
CGAP (NCI)Hs.654677
Alternative Splicing GalleryENSG00000130119
Gene ExpressionGNL3L [ NCBI-GEO ]   GNL3L [ EBI - ARRAY_EXPRESS ]   GNL3L [ SEEK ]   GNL3L [ MEM ]
Gene Expression Viewer (FireBrowse)GNL3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54552
GTEX Portal (Tissue expression)GNL3L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVN8
Splice isoforms : SwissVarQ9NVN8
PhosPhoSitePlusQ9NVN8
Domaine pattern : Prosite (Expaxy)G_CP (PS51721)   
Domains : Interpro (EBI)G_CP_dom    GTP_binding_domain    P-loop_NTPase   
Domain families : Pfam (Sanger)MMR_HSR1 (PF01926)   
Domain families : Pfam (NCBI)pfam01926   
Conserved Domain (NCBI)GNL3L
DMDM Disease mutations54552
Blocks (Seattle)GNL3L
SuperfamilyQ9NVN8
Human Protein AtlasENSG00000130119
Peptide AtlasQ9NVN8
HPRD06514
IPIIPI00005132   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVN8
IntAct (EBI)Q9NVN8
FunCoupENSG00000130119
BioGRIDGNL3L
STRING (EMBL)GNL3L
ZODIACGNL3L
Ontologies - Pathways
QuickGOQ9NVN8
Ontology : AmiGORNA binding  protein binding  GTP binding  nucleus  telomerase holoenzyme complex  nucleolus  cytosol  membrane  negative regulation of protein ubiquitination  regulation of protein stability  regulation of protein stability  negative regulation of protein binding  negative regulation of telomere maintenance via telomerase  negative regulation of protein sumoylation  ribosome biogenesis  positive regulation of protein homodimerization activity  positive regulation of protein localization to chromosome, telomeric region  positive regulation of protein localization to chromosome, telomeric region  
Ontology : EGO-EBIRNA binding  protein binding  GTP binding  nucleus  telomerase holoenzyme complex  nucleolus  cytosol  membrane  negative regulation of protein ubiquitination  regulation of protein stability  regulation of protein stability  negative regulation of protein binding  negative regulation of telomere maintenance via telomerase  negative regulation of protein sumoylation  ribosome biogenesis  positive regulation of protein homodimerization activity  positive regulation of protein localization to chromosome, telomeric region  positive regulation of protein localization to chromosome, telomeric region  
Pathways : KEGGRibosome biogenesis in eukaryotes   
NDEx NetworkGNL3L
Atlas of Cancer Signalling NetworkGNL3L
Wikipedia pathwaysGNL3L
Orthology - Evolution
OrthoDB54552
GeneTree (enSembl)ENSG00000130119
Phylogenetic Trees/Animal Genes : TreeFamGNL3L
HOVERGENQ9NVN8
HOGENOMQ9NVN8
Homologs : HomoloGeneGNL3L
Homology/Alignments : Family Browser (UCSC)GNL3L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGNL3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GNL3L
dbVarGNL3L
ClinVarGNL3L
1000_GenomesGNL3L 
Exome Variant ServerGNL3L
ExAC (Exome Aggregation Consortium)GNL3L (select the gene name)
Genetic variants : HAPMAP54552
Genomic Variants (DGV)GNL3L [DGVbeta]
DECIPHERGNL3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGNL3L 
Mutations
ICGC Data PortalGNL3L 
TCGA Data PortalGNL3L 
Broad Tumor PortalGNL3L
OASIS PortalGNL3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGNL3L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGNL3L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch GNL3L
DgiDB (Drug Gene Interaction Database)GNL3L
DoCM (Curated mutations)GNL3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GNL3L (select a term)
intoGenGNL3L
Cancer3DGNL3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300873   
Orphanet
MedgenGNL3L
Genetic Testing Registry GNL3L
NextProtQ9NVN8 [Medical]
TSGene54552
GENETestsGNL3L
Target ValidationGNL3L
Huge Navigator GNL3L [HugePedia]
snp3D : Map Gene to Disease54552
BioCentury BCIQGNL3L
ClinGenGNL3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54552
Chemical/Pharm GKB GenePA134922876
Clinical trialGNL3L
Miscellaneous
canSAR (ICR)GNL3L (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGNL3L
EVEXGNL3L
GoPubMedGNL3L
iHOPGNL3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:10:11 CEST 2017

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