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GNPDA2 (glucosamine-6-phosphate deaminase 2)

Identity

Alias_symbol (synonym)SB52
Other aliasGNP2
HGNC (Hugo) GNPDA2
LocusID (NCBI) 132789
Atlas_Id 63866
Location 4p12  [Link to chromosome band 4p12]
Location_base_pair Starts at 44701795 and ends at 44726634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNPDA2 (4p12) / GRID2 (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GNPDA2   21526
Cards
Entrez_Gene (NCBI)GNPDA2  132789  glucosamine-6-phosphate deaminase 2
AliasesGNP2; SB52
GeneCards (Weizmann)GNPDA2
Ensembl hg19 (Hinxton)ENSG00000163281 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163281 [Gene_View]  chr4:44701795-44726634 [Contig_View]  GNPDA2 [Vega]
ICGC DataPortalENSG00000163281
TCGA cBioPortalGNPDA2
AceView (NCBI)GNPDA2
Genatlas (Paris)GNPDA2
WikiGenes132789
SOURCE (Princeton)GNPDA2
Genetics Home Reference (NIH)GNPDA2
Genomic and cartography
GoldenPath hg38 (UCSC)GNPDA2  -     chr4:44701795-44726634 -  4p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GNPDA2  -     4p12   [Description]    (hg19-Feb_2009)
EnsemblGNPDA2 - 4p12 [CytoView hg19]  GNPDA2 - 4p12 [CytoView hg38]
Mapping of homologs : NCBIGNPDA2 [Mapview hg19]  GNPDA2 [Mapview hg38]
OMIM613222   
Gene and transcription
Genbank (Entrez)AB209904 AF247786 AK055639 AK296051 AK308920
RefSeq transcript (Entrez)NM_001270880 NM_001270881 NM_138335
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GNPDA2
Cluster EST : UnigeneHs.619562 [ NCBI ]
CGAP (NCI)Hs.619562
Alternative Splicing GalleryENSG00000163281
Gene ExpressionGNPDA2 [ NCBI-GEO ]   GNPDA2 [ EBI - ARRAY_EXPRESS ]   GNPDA2 [ SEEK ]   GNPDA2 [ MEM ]
Gene Expression Viewer (FireBrowse)GNPDA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)132789
GTEX Portal (Tissue expression)GNPDA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDQ7
Splice isoforms : SwissVarQ8TDQ7
Catalytic activity : Enzyme3.5.99.6 [ Enzyme-Expasy ]   3.5.99.63.5.99.6 [ IntEnz-EBI ]   3.5.99.6 [ BRENDA ]   3.5.99.6 [ KEGG ]   
PhosPhoSitePlusQ8TDQ7
Domaine pattern : Prosite (Expaxy)GLC_GALNAC_ISOMERASE (PS01161)   
Domains : Interpro (EBI)Glc/Gal-6P_isomerase    Glucosamine6P_isomerase    Glucosamine6P_isomerase_CS   
Domain families : Pfam (Sanger)Glucosamine_iso (PF01182)   
Domain families : Pfam (NCBI)pfam01182   
Conserved Domain (NCBI)GNPDA2
DMDM Disease mutations132789
Blocks (Seattle)GNPDA2
SuperfamilyQ8TDQ7
Human Protein AtlasENSG00000163281
Peptide AtlasQ8TDQ7
HPRD13594
IPIIPI00550894   IPI00896510   IPI00896466   IPI00965089   IPI00965352   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDQ7
IntAct (EBI)Q8TDQ7
FunCoupENSG00000163281
BioGRIDGNPDA2
STRING (EMBL)GNPDA2
ZODIACGNPDA2
Ontologies - Pathways
QuickGOQ8TDQ7
Ontology : AmiGOglucosamine-6-phosphate deaminase activity  protein binding  nucleus  cytosol  glucose metabolic process  N-acetylglucosamine metabolic process  hydrolase activity  
Ontology : EGO-EBIglucosamine-6-phosphate deaminase activity  protein binding  nucleus  cytosol  glucose metabolic process  N-acetylglucosamine metabolic process  hydrolase activity  
Pathways : KEGGAmino sugar and nucleotide sugar metabolism   
NDEx NetworkGNPDA2
Atlas of Cancer Signalling NetworkGNPDA2
Wikipedia pathwaysGNPDA2
Orthology - Evolution
OrthoDB132789
GeneTree (enSembl)ENSG00000163281
Phylogenetic Trees/Animal Genes : TreeFamGNPDA2
HOVERGENQ8TDQ7
HOGENOMQ8TDQ7
Homologs : HomoloGeneGNPDA2
Homology/Alignments : Family Browser (UCSC)GNPDA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGNPDA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GNPDA2
dbVarGNPDA2
ClinVarGNPDA2
1000_GenomesGNPDA2 
Exome Variant ServerGNPDA2
ExAC (Exome Aggregation Consortium)GNPDA2 (select the gene name)
Genetic variants : HAPMAP132789
Genomic Variants (DGV)GNPDA2 [DGVbeta]
DECIPHERGNPDA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGNPDA2 
Mutations
ICGC Data PortalGNPDA2 
TCGA Data PortalGNPDA2 
Broad Tumor PortalGNPDA2
OASIS PortalGNPDA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGNPDA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGNPDA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GNPDA2
DgiDB (Drug Gene Interaction Database)GNPDA2
DoCM (Curated mutations)GNPDA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GNPDA2 (select a term)
intoGenGNPDA2
Cancer3DGNPDA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613222   
Orphanet
MedgenGNPDA2
Genetic Testing Registry GNPDA2
NextProtQ8TDQ7 [Medical]
TSGene132789
GENETestsGNPDA2
Target ValidationGNPDA2
Huge Navigator GNPDA2 [HugePedia]
snp3D : Map Gene to Disease132789
BioCentury BCIQGNPDA2
ClinGenGNPDA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD132789
Chemical/Pharm GKB GenePA134939177
Clinical trialGNPDA2
Miscellaneous
canSAR (ICR)GNPDA2 (select the gene name)
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGNPDA2
EVEXGNPDA2
GoPubMedGNPDA2
iHOPGNPDA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:53 CEST 2017

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