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GNPNAT1 (glucosamine-phosphate N-acetyltransferase 1)

Identity

Alias_symbol (synonym)Gpnat1
FLJ10607
Other aliasGNA1
GNPNAT
HGNC (Hugo) GNPNAT1
LocusID (NCBI) 64841
Atlas_Id 63867
Location 14q22.1  [Link to chromosome band 14q22]
Location_base_pair Starts at 52775193 and ends at 52791668 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GNPNAT1 (14q22.1) / GNPNAT1 (14q22.1)GNPNAT1 (14q22.1) / STYX (14q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GNPNAT1   19980
Cards
Entrez_Gene (NCBI)GNPNAT1  64841  glucosamine-phosphate N-acetyltransferase 1
AliasesGNA1; GNPNAT; Gpnat1
GeneCards (Weizmann)GNPNAT1
Ensembl hg19 (Hinxton)ENSG00000100522 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100522 [Gene_View]  chr14:52775193-52791668 [Contig_View]  GNPNAT1 [Vega]
ICGC DataPortalENSG00000100522
TCGA cBioPortalGNPNAT1
AceView (NCBI)GNPNAT1
Genatlas (Paris)GNPNAT1
WikiGenes64841
SOURCE (Princeton)GNPNAT1
Genetics Home Reference (NIH)GNPNAT1
Genomic and cartography
GoldenPath hg38 (UCSC)GNPNAT1  -     chr14:52775193-52791668 -  14q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GNPNAT1  -     14q22.1   [Description]    (hg19-Feb_2009)
EnsemblGNPNAT1 - 14q22.1 [CytoView hg19]  GNPNAT1 - 14q22.1 [CytoView hg38]
Mapping of homologs : NCBIGNPNAT1 [Mapview hg19]  GNPNAT1 [Mapview hg38]
OMIM616510   
Gene and transcription
Genbank (Entrez)AK001469 AK025575 AK090577 BC012179 BG717628
RefSeq transcript (Entrez)NM_198066
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GNPNAT1
Cluster EST : UnigeneHs.478025 [ NCBI ]
CGAP (NCI)Hs.478025
Alternative Splicing GalleryENSG00000100522
Gene ExpressionGNPNAT1 [ NCBI-GEO ]   GNPNAT1 [ EBI - ARRAY_EXPRESS ]   GNPNAT1 [ SEEK ]   GNPNAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)GNPNAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64841
GTEX Portal (Tissue expression)GNPNAT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96EK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96EK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96EK6
Splice isoforms : SwissVarQ96EK6
PhosPhoSitePlusQ96EK6
Domaine pattern : Prosite (Expaxy)GNAT (PS51186)   
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    GNAT_dom   
Domain families : Pfam (Sanger)Acetyltransf_1 (PF00583)   
Domain families : Pfam (NCBI)pfam00583   
Conserved Domain (NCBI)GNPNAT1
DMDM Disease mutations64841
Blocks (Seattle)GNPNAT1
PDB (SRS)2HUZ    2O28    3CXP    3CXQ    3CXS   
PDB (PDBSum)2HUZ    2O28    3CXP    3CXQ    3CXS   
PDB (IMB)2HUZ    2O28    3CXP    3CXQ    3CXS   
PDB (RSDB)2HUZ    2O28    3CXP    3CXQ    3CXS   
Structural Biology KnowledgeBase2HUZ    2O28    3CXP    3CXQ    3CXS   
SCOP (Structural Classification of Proteins)2HUZ    2O28    3CXP    3CXQ    3CXS   
CATH (Classification of proteins structures)2HUZ    2O28    3CXP    3CXQ    3CXS   
SuperfamilyQ96EK6
Human Protein AtlasENSG00000100522
Peptide AtlasQ96EK6
HPRD17046
IPIIPI00061525   IPI01025970   IPI01026078   
Protein Interaction databases
DIP (DOE-UCLA)Q96EK6
IntAct (EBI)Q96EK6
FunCoupENSG00000100522
BioGRIDGNPNAT1
STRING (EMBL)GNPNAT1
ZODIACGNPNAT1
Ontologies - Pathways
QuickGOQ96EK6
Ontology : AmiGOGolgi membrane  liver development  glucosamine 6-phosphate N-acetyltransferase activity  glucosamine 6-phosphate N-acetyltransferase activity  late endosome  endoplasmic reticulum-Golgi intermediate compartment  cytosol  glucosamine metabolic process  N-acetylglucosamine metabolic process  UDP-N-acetylglucosamine biosynthetic process  UDP-N-acetylglucosamine biosynthetic process  UDP-N-acetylglucosamine biosynthetic process  endosome membrane  identical protein binding  monosaccharide binding  
Ontology : EGO-EBIGolgi membrane  liver development  glucosamine 6-phosphate N-acetyltransferase activity  glucosamine 6-phosphate N-acetyltransferase activity  late endosome  endoplasmic reticulum-Golgi intermediate compartment  cytosol  glucosamine metabolic process  N-acetylglucosamine metabolic process  UDP-N-acetylglucosamine biosynthetic process  UDP-N-acetylglucosamine biosynthetic process  UDP-N-acetylglucosamine biosynthetic process  endosome membrane  identical protein binding  monosaccharide binding  
Pathways : KEGGAmino sugar and nucleotide sugar metabolism   
NDEx NetworkGNPNAT1
Atlas of Cancer Signalling NetworkGNPNAT1
Wikipedia pathwaysGNPNAT1
Orthology - Evolution
OrthoDB64841
GeneTree (enSembl)ENSG00000100522
Phylogenetic Trees/Animal Genes : TreeFamGNPNAT1
HOVERGENQ96EK6
HOGENOMQ96EK6
Homologs : HomoloGeneGNPNAT1
Homology/Alignments : Family Browser (UCSC)GNPNAT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGNPNAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GNPNAT1
dbVarGNPNAT1
ClinVarGNPNAT1
1000_GenomesGNPNAT1 
Exome Variant ServerGNPNAT1
ExAC (Exome Aggregation Consortium)GNPNAT1 (select the gene name)
Genetic variants : HAPMAP64841
Genomic Variants (DGV)GNPNAT1 [DGVbeta]
DECIPHERGNPNAT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGNPNAT1 
Mutations
ICGC Data PortalGNPNAT1 
TCGA Data PortalGNPNAT1 
Broad Tumor PortalGNPNAT1
OASIS PortalGNPNAT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGNPNAT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGNPNAT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GNPNAT1
DgiDB (Drug Gene Interaction Database)GNPNAT1
DoCM (Curated mutations)GNPNAT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GNPNAT1 (select a term)
intoGenGNPNAT1
Cancer3DGNPNAT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616510   
Orphanet
MedgenGNPNAT1
Genetic Testing Registry GNPNAT1
NextProtQ96EK6 [Medical]
TSGene64841
GENETestsGNPNAT1
Target ValidationGNPNAT1
Huge Navigator GNPNAT1 [HugePedia]
snp3D : Map Gene to Disease64841
BioCentury BCIQGNPNAT1
ClinGenGNPNAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64841
Chemical/Pharm GKB GenePA134901326
Clinical trialGNPNAT1
Miscellaneous
canSAR (ICR)GNPNAT1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGNPNAT1
EVEXGNPNAT1
GoPubMedGNPNAT1
iHOPGNPNAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:53 CEST 2017

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