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GNPTG (N-acetylglucosamine-1-phosphate transferase gamma subunit)

Identity

Other namesC16orf27
GNPTAG
LP2537
RJD9
HGNC (Hugo) GNPTG
LocusID (NCBI) 84572
Atlas_Id 51438
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1401900 and ends at 1413352 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
COPE (19p13.11) / GNPTG (16p13.3)GNPTG (16p13.3) / GNPTG (16p13.3)GNPTG (16p13.3) / NUBP2 (16p13.3)
PLCZ1 (12p12.3) / GNPTG (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GNPTG   23026
Cards
Entrez_Gene (NCBI)GNPTG  84572  N-acetylglucosamine-1-phosphate transferase gamma subunit
AliasesC16orf27; GNPTAG; LP2537; RJD9
GeneCards (Weizmann)GNPTG
Ensembl hg19 (Hinxton)ENSG00000090581 [Gene_View]  chr16:1401900-1413352 [Contig_View]  GNPTG [Vega]
Ensembl hg38 (Hinxton)ENSG00000090581 [Gene_View]  chr16:1401900-1413352 [Contig_View]  GNPTG [Vega]
ICGC DataPortalENSG00000090581
TCGA cBioPortalGNPTG
AceView (NCBI)GNPTG
Genatlas (Paris)GNPTG
WikiGenes84572
SOURCE (Princeton)GNPTG
Genomic and cartography
GoldenPath hg19 (UCSC)GNPTG  -     chr16:1401900-1413352 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GNPTG  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblGNPTG - 16p13.3 [CytoView hg19]  GNPTG - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIGNPTG [Mapview hg19]  GNPTG [Mapview hg38]
OMIM252605   607838   
Gene and transcription
Genbank (Entrez)AA513392 AF302786 AK126110 AK312067 AY203933
RefSeq transcript (Entrez)NM_032520
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_016985 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)GNPTG
Cluster EST : UnigeneHs.241575 [ NCBI ]
CGAP (NCI)Hs.241575
Alternative Splicing GalleryENSG00000090581
Gene ExpressionGNPTG [ NCBI-GEO ]   GNPTG [ EBI - ARRAY_EXPRESS ]   GNPTG [ SEEK ]   GNPTG [ MEM ]
Gene Expression Viewer (FireBrowse)GNPTG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84572
GTEX Portal (Tissue expression)GNPTG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJJ9 (Uniprot)
NextProtQ9UJJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJJ9
Splice isoforms : SwissVarQ9UJJ9 (Swissvar)
PhosPhoSitePlusQ9UJJ9
Domains : Interpro (EBI)Man6P_isomerase_rcpt-bd_dom   
Domain families : Pfam (Sanger)PRKCSH_1 (PF13015)   
Domain families : Pfam (NCBI)pfam13015   
DMDM Disease mutations84572
Blocks (Seattle)GNPTG
SuperfamilyQ9UJJ9
Human Protein AtlasENSG00000090581
Peptide AtlasQ9UJJ9
HPRD06384
IPIIPI00000137   IPI00382750   IPI00977266   IPI00977899   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJJ9
IntAct (EBI)Q9UJJ9
FunCoupENSG00000090581
BioGRIDGNPTG
STRING (EMBL)GNPTG
ZODIACGNPTG
Ontologies - Pathways
QuickGOQ9UJJ9
Ontology : AmiGOGolgi membrane  UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity  Golgi apparatus  N-glycan processing to lysosome  protein homodimerization activity  carbohydrate phosphorylation  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity  Golgi apparatus  N-glycan processing to lysosome  protein homodimerization activity  carbohydrate phosphorylation  extracellular exosome  
Pathways : KEGGLysosome   
NDEx NetworkGNPTG
Atlas of Cancer Signalling NetworkGNPTG
Wikipedia pathwaysGNPTG
Orthology - Evolution
OrthoDB84572
GeneTree (enSembl)ENSG00000090581
Phylogenetic Trees/Animal Genes : TreeFamGNPTG
Homologs : HomoloGeneGNPTG
Homology/Alignments : Family Browser (UCSC)GNPTG
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGNPTG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GNPTG
dbVarGNPTG
ClinVarGNPTG
1000_GenomesGNPTG 
Exome Variant ServerGNPTG
ExAC (Exome Aggregation Consortium)GNPTG (select the gene name)
Genetic variants : HAPMAP84572
Genomic Variants (DGV)GNPTG [DGVbeta]
Mutations
ICGC Data PortalGNPTG 
TCGA Data PortalGNPTG 
Broad Tumor PortalGNPTG
OASIS PortalGNPTG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGNPTG 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch GNPTG
DgiDB (Drug Gene Interaction Database)GNPTG
DoCM (Curated mutations)GNPTG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GNPTG (select a term)
intoGenGNPTG
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:1401900-1413352  ENSG00000090581
CONAN: Copy Number AnalysisGNPTG 
Mutations and Diseases : HGMDGNPTG
OMIM252605    607838   
MedgenGNPTG
Genetic Testing Registry GNPTG
NextProtQ9UJJ9 [Medical]
TSGene84572
GENETestsGNPTG
Huge Navigator GNPTG [HugePedia]
snp3D : Map Gene to Disease84572
BioCentury BCIQGNPTG
ClinGenGNPTG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84572
Chemical/Pharm GKB GenePA134990433
Clinical trialGNPTG
Miscellaneous
canSAR (ICR)GNPTG (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGNPTG
EVEXGNPTG
GoPubMedGNPTG
iHOPGNPTG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:51:18 CEST 2016

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