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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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GNPTG (N-acetylglucosamine-1-phosphate transferase, gamma subunit)

Identity

Other namesC16orf27
GNPTAG
LP2537
RJD9
HGNC (Hugo) GNPTG
LocusID (NCBI) 84572
Location 16p13.3
Location_base_pair Starts at 1401900 and ends at 1413352 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)GNPTG   23026
Cards
Entrez_Gene (NCBI)GNPTG  84572  N-acetylglucosamine-1-phosphate transferase, gamma subunit
GeneCards (Weizmann)GNPTG
Ensembl hg19 (Hinxton)ENSG00000090581 [Gene_View]  chr16:1401900-1413352 [Contig_View]  GNPTG [Vega]
Ensembl hg38 (Hinxton)ENSG00000090581 [Gene_View]  chr16:1401900-1413352 [Contig_View]  GNPTG [Vega]
ICGC DataPortalENSG00000090581
cBioPortalGNPTG
AceView (NCBI)GNPTG
Genatlas (Paris)GNPTG
WikiGenes84572
SOURCE (Princeton)GNPTG
Genomic and cartography
GoldenPath hg19 (UCSC)GNPTG  -     chr16:1401900-1413352 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GNPTG  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblGNPTG - 16p13.3 [CytoView hg19]  GNPTG - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIGNPTG [Mapview hg19]  GNPTG [Mapview hg38]
OMIM252605   607838   
Gene and transcription
Genbank (Entrez)AA513392 AF302786 AK126110 AK312067 AY203933
RefSeq transcript (Entrez)NM_032520
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NG_016985 NT_010393 NW_001838339 NW_004929400
Consensus coding sequences : CCDS (NCBI)GNPTG
Cluster EST : UnigeneHs.241575 [ NCBI ]
CGAP (NCI)Hs.241575
Alternative Splicing : Fast-db (Paris)GSHG0010834
Alternative Splicing GalleryENSG00000090581
Gene ExpressionGNPTG [ NCBI-GEO ]     GNPTG [ SEEK ]   GNPTG [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJJ9 (Uniprot)
NextProtQ9UJJ9  [Medical]
With graphics : InterProQ9UJJ9
Splice isoforms : SwissVarQ9UJJ9 (Swissvar)
Domains : Interpro (EBI)Man6P_isomerase_rcpt-bd_dom   
Related proteins : CluSTrQ9UJJ9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
DMDM Disease mutations84572
Blocks (Seattle)Q9UJJ9
Human Protein AtlasENSG00000090581
Peptide AtlasQ9UJJ9
HPRD06384
IPIIPI00000137   IPI00382750   IPI00977266   IPI00977899   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJJ9
IntAct (EBI)Q9UJJ9
FunCoupENSG00000090581
BioGRIDGNPTG
IntegromeDBGNPTG
STRING (EMBL)GNPTG
Ontologies - Pathways
QuickGOQ9UJJ9
Ontology : AmiGOGolgi membrane  Golgi apparatus  N-glycan processing to lysosome  protein homodimerization activity  carbohydrate phosphorylation  extracellular vesicular exosome  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  N-glycan processing to lysosome  protein homodimerization activity  carbohydrate phosphorylation  extracellular vesicular exosome  
Pathways : KEGGLysosome   
Protein Interaction DatabaseGNPTG
DoCM (Curated mutations)GNPTG
Wikipedia pathwaysGNPTG
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGNPTG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GNPTG
dbVarGNPTG
ClinVarGNPTG
1000_GenomesGNPTG 
Exome Variant ServerGNPTG
SNP (GeneSNP Utah)GNPTG
SNP : HGBaseGNPTG
Genetic variants : HAPMAPGNPTG
Genomic Variants (DGV)GNPTG [DGVbeta]
Mutations
ICGC Data PortalENSG00000090581 
Somatic Mutations in Cancer : COSMICGNPTG 
CONAN: Copy Number AnalysisGNPTG 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:1401900-1413352
Mutations and Diseases : HGMDGNPTG
OMIM252605    607838   
MedgenGNPTG
NextProtQ9UJJ9 [Medical]
GENETestsGNPTG
Disease Genetic AssociationGNPTG
Huge Navigator GNPTG [HugePedia]  GNPTG [HugeCancerGEM]
snp3D : Map Gene to Disease84572
DGIdb (Drug Gene Interaction db)GNPTG
General knowledge
Homologs : HomoloGeneGNPTG
Homology/Alignments : Family Browser (UCSC)GNPTG
Phylogenetic Trees/Animal Genes : TreeFamGNPTG
Chemical/Protein Interactions : CTD84572
Chemical/Pharm GKB GenePA134990433
Clinical trialGNPTG
Cancer Resource (Charite)ENSG00000090581
Other databases
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
CoreMineGNPTG
GoPubMedGNPTG
iHOPGNPTG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 16:02:41 CET 2015

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