Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GNRH2 (gonadotropin releasing hormone 2)

Identity

Alias_namesgonadotropin-releasing hormone 2
Other aliasGnRH-II
LH-RHII
HGNC (Hugo) GNRH2
LocusID (NCBI) 2797
Atlas_Id 45598
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 3043622 and ends at 3045745 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GNRH2   4420
Cards
Entrez_Gene (NCBI)GNRH2  2797  gonadotropin releasing hormone 2
AliasesGnRH-II; LH-RHII
GeneCards (Weizmann)GNRH2
Ensembl hg19 (Hinxton)ENSG00000125787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125787 [Gene_View]  chr20:3043622-3045745 [Contig_View]  GNRH2 [Vega]
ICGC DataPortalENSG00000125787
TCGA cBioPortalGNRH2
AceView (NCBI)GNRH2
Genatlas (Paris)GNRH2
WikiGenes2797
SOURCE (Princeton)GNRH2
Genetics Home Reference (NIH)GNRH2
Genomic and cartography
GoldenPath hg38 (UCSC)GNRH2  -     chr20:3043622-3045745 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GNRH2  -     20p13   [Description]    (hg19-Feb_2009)
EnsemblGNRH2 - 20p13 [CytoView hg19]  GNRH2 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIGNRH2 [Mapview hg19]  GNRH2 [Mapview hg38]
OMIM602352   
Gene and transcription
Genbank (Entrez)AF036330 AF190640 BC069362 BC115399 BC115400
RefSeq transcript (Entrez)NM_001310220 NM_001501 NM_178331 NM_178332
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GNRH2
Cluster EST : UnigeneHs.129715 [ NCBI ]
CGAP (NCI)Hs.129715
Alternative Splicing GalleryENSG00000125787
Gene ExpressionGNRH2 [ NCBI-GEO ]   GNRH2 [ EBI - ARRAY_EXPRESS ]   GNRH2 [ SEEK ]   GNRH2 [ MEM ]
Gene Expression Viewer (FireBrowse)GNRH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2797
GTEX Portal (Tissue expression)GNRH2
Human Protein AtlasENSG00000125787-GNRH2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43555   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43555  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43555
Splice isoforms : SwissVarO43555
PhosPhoSitePlusO43555
Domaine pattern : Prosite (Expaxy)GNRH (PS00473)   
Domains : Interpro (EBI)GnRH    Gonadoliberin_I   
Domain families : Pfam (Sanger)GnRH (PF00446)   
Domain families : Pfam (NCBI)pfam00446   
Conserved Domain (NCBI)GNRH2
DMDM Disease mutations2797
Blocks (Seattle)GNRH2
SuperfamilyO43555
Human Protein Atlas [tissue]ENSG00000125787-GNRH2 [tissue]
Peptide AtlasO43555
HPRD03830
IPIIPI00012880   IPI00221119   IPI00221120   
Protein Interaction databases
DIP (DOE-UCLA)O43555
IntAct (EBI)O43555
FunCoupENSG00000125787
BioGRIDGNRH2
STRING (EMBL)GNRH2
ZODIACGNRH2
Ontologies - Pathways
QuickGOO43555
Ontology : AmiGOhormone activity  extracellular region  signal transduction  multicellular organism development  
Ontology : EGO-EBIhormone activity  extracellular region  signal transduction  multicellular organism development  
Pathways : KEGGGnRH signaling pathway   
NDEx NetworkGNRH2
Atlas of Cancer Signalling NetworkGNRH2
Wikipedia pathwaysGNRH2
Orthology - Evolution
OrthoDB2797
GeneTree (enSembl)ENSG00000125787
Phylogenetic Trees/Animal Genes : TreeFamGNRH2
HOVERGENO43555
HOGENOMO43555
Homologs : HomoloGeneGNRH2
Homology/Alignments : Family Browser (UCSC)GNRH2
Gene fusions - Rearrangements
Tumor Fusion PortalGNRH2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGNRH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GNRH2
dbVarGNRH2
ClinVarGNRH2
1000_GenomesGNRH2 
Exome Variant ServerGNRH2
ExAC (Exome Aggregation Consortium)ENSG00000125787
GNOMAD BrowserENSG00000125787
Genetic variants : HAPMAP2797
Genomic Variants (DGV)GNRH2 [DGVbeta]
DECIPHERGNRH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGNRH2 
Mutations
ICGC Data PortalGNRH2 
TCGA Data PortalGNRH2 
Broad Tumor PortalGNRH2
OASIS PortalGNRH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGNRH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGNRH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GNRH2
DgiDB (Drug Gene Interaction Database)GNRH2
DoCM (Curated mutations)GNRH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GNRH2 (select a term)
intoGenGNRH2
Cancer3DGNRH2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602352   
Orphanet
DisGeNETGNRH2
MedgenGNRH2
Genetic Testing Registry GNRH2
NextProtO43555 [Medical]
TSGene2797
GENETestsGNRH2
Target ValidationGNRH2
Huge Navigator GNRH2 [HugePedia]
snp3D : Map Gene to Disease2797
BioCentury BCIQGNRH2
ClinGenGNRH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2797
Chemical/Pharm GKB GenePA28799
Clinical trialGNRH2
Miscellaneous
canSAR (ICR)GNRH2 (select the gene name)
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGNRH2
EVEXGNRH2
GoPubMedGNRH2
iHOPGNRH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:14:57 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.