Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GNRHR2 (gonadotropin releasing hormone receptor 2 (pseudogene))

Identity

Alias_namesgonadotropin-releasing hormone (type 2) receptor 2
Other aliasGnRH-II-R
HGNC (Hugo) GNRHR2
LocusID (NCBI) 114814
Atlas_Id 46132
Location 1q21.1  [Link to chromosome band 1q21]
Location_base_pair Starts at 145919190 and ends at 145920668 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GNRHR2   16341
Cards
Entrez_Gene (NCBI)GNRHR2  114814  gonadotropin releasing hormone receptor 2 (pseudogene)
AliasesGnRH-II-R
GeneCards (Weizmann)GNRHR2
Ensembl hg19 (Hinxton)ENSG00000211451 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000211451 [Gene_View]  chr1:145919190-145920668 [Contig_View]  GNRHR2 [Vega]
ICGC DataPortalENSG00000211451
TCGA cBioPortalGNRHR2
AceView (NCBI)GNRHR2
Genatlas (Paris)GNRHR2
WikiGenes114814
SOURCE (Princeton)GNRHR2
Genetics Home Reference (NIH)GNRHR2
Genomic and cartography
GoldenPath hg38 (UCSC)GNRHR2  -     chr1:145919190-145920668 +  1q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GNRHR2  -     1q21.1   [Description]    (hg19-Feb_2009)
EnsemblGNRHR2 - 1q21.1 [CytoView hg19]  GNRHR2 - 1q21.1 [CytoView hg38]
Mapping of homologs : NCBIGNRHR2 [Mapview hg19]  GNRHR2 [Mapview hg38]
OMIM612875   
Gene and transcription
Genbank (Entrez)AB239331 AK310736 AY077708 AY081843 AY233132
RefSeq transcript (Entrez)NM_057163 NM_206994
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GNRHR2
Cluster EST : UnigeneHs.711567 [ NCBI ]
CGAP (NCI)Hs.711567
Alternative Splicing GalleryENSG00000211451
Gene ExpressionGNRHR2 [ NCBI-GEO ]   GNRHR2 [ EBI - ARRAY_EXPRESS ]   GNRHR2 [ SEEK ]   GNRHR2 [ MEM ]
Gene Expression Viewer (FireBrowse)GNRHR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114814
GTEX Portal (Tissue expression)GNRHR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96P88   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96P88  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96P88
Splice isoforms : SwissVarQ96P88
PhosPhoSitePlusQ96P88
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    GphnRH_2_rcpt    GphnRH_fam_rcpt   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GNRHR2
DMDM Disease mutations114814
Blocks (Seattle)GNRHR2
SuperfamilyQ96P88
Human Protein AtlasENSG00000211451
Peptide AtlasQ96P88
HPRD11780
IPIIPI00044315   IPI00930125   IPI00980654   IPI00854873   IPI00216032   
Protein Interaction databases
DIP (DOE-UCLA)Q96P88
IntAct (EBI)Q96P88
FunCoupENSG00000211451
BioGRIDGNRHR2
STRING (EMBL)GNRHR2
ZODIACGNRHR2
Ontologies - Pathways
QuickGOQ96P88
Ontology : AmiGOgonadotropin-releasing hormone receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  peptide binding  cellular response to gonadotropin-releasing hormone  
Ontology : EGO-EBIgonadotropin-releasing hormone receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  peptide binding  cellular response to gonadotropin-releasing hormone  
NDEx NetworkGNRHR2
Atlas of Cancer Signalling NetworkGNRHR2
Wikipedia pathwaysGNRHR2
Orthology - Evolution
OrthoDB114814
GeneTree (enSembl)ENSG00000211451
Phylogenetic Trees/Animal Genes : TreeFamGNRHR2
HOVERGENQ96P88
HOGENOMQ96P88
Homologs : HomoloGeneGNRHR2
Homology/Alignments : Family Browser (UCSC)GNRHR2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGNRHR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GNRHR2
dbVarGNRHR2
ClinVarGNRHR2
1000_GenomesGNRHR2 
Exome Variant ServerGNRHR2
ExAC (Exome Aggregation Consortium)GNRHR2 (select the gene name)
Genetic variants : HAPMAP114814
Genomic Variants (DGV)GNRHR2 [DGVbeta]
DECIPHERGNRHR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGNRHR2 
Mutations
ICGC Data PortalGNRHR2 
TCGA Data PortalGNRHR2 
Broad Tumor PortalGNRHR2
OASIS PortalGNRHR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGNRHR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGNRHR2
BioMutasearch GNRHR2
DgiDB (Drug Gene Interaction Database)GNRHR2
DoCM (Curated mutations)GNRHR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GNRHR2 (select a term)
intoGenGNRHR2
Cancer3DGNRHR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612875   
Orphanet
MedgenGNRHR2
Genetic Testing Registry GNRHR2
NextProtQ96P88 [Medical]
TSGene114814
GENETestsGNRHR2
Huge Navigator GNRHR2 [HugePedia]
snp3D : Map Gene to Disease114814
BioCentury BCIQGNRHR2
ClinGenGNRHR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114814
Chemical/Pharm GKB GenePA28801
Clinical trialGNRHR2
Miscellaneous
canSAR (ICR)GNRHR2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGNRHR2
EVEXGNRHR2
GoPubMedGNRHR2
iHOPGNRHR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:17:36 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.