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GOLGA1 (golgin A1)

Identity

Alias_namesgolgi autoantigen
Alias_symbol (synonym)golgin-97
MGC33154
Other alias
HGNC (Hugo) GOLGA1
LocusID (NCBI) 2800
Atlas_Id 56536
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 124878294 and ends at 124941107 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GOLGA1 (9q33.3) / ITGB3 (17q21.32)KIAA0319L (1p34.3) / GOLGA1 (9q33.3)NR6A1 (9q33.3) / GOLGA1 (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA1   4424
Cards
Entrez_Gene (NCBI)GOLGA1  2800  golgin A1
Aliasesgolgin-97
GeneCards (Weizmann)GOLGA1
Ensembl hg19 (Hinxton)ENSG00000136935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136935 [Gene_View]  chr9:124878294-124941107 [Contig_View]  GOLGA1 [Vega]
ICGC DataPortalENSG00000136935
TCGA cBioPortalGOLGA1
AceView (NCBI)GOLGA1
Genatlas (Paris)GOLGA1
WikiGenes2800
SOURCE (Princeton)GOLGA1
Genetics Home Reference (NIH)GOLGA1
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA1  -     chr9:124878294-124941107 -  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA1  -     9q33.3   [Description]    (hg19-Feb_2009)
EnsemblGOLGA1 - 9q33.3 [CytoView hg19]  GOLGA1 - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBIGOLGA1 [Mapview hg19]  GOLGA1 [Mapview hg38]
OMIM602502   
Gene and transcription
Genbank (Entrez)AA027278 AB208858 AK302445 AK307789 AW237629
RefSeq transcript (Entrez)NM_002077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA1
Cluster EST : UnigeneHs.133469 [ NCBI ]
CGAP (NCI)Hs.133469
Alternative Splicing GalleryENSG00000136935
Gene ExpressionGOLGA1 [ NCBI-GEO ]   GOLGA1 [ EBI - ARRAY_EXPRESS ]   GOLGA1 [ SEEK ]   GOLGA1 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2800
GTEX Portal (Tissue expression)GOLGA1
Human Protein AtlasENSG00000136935-GOLGA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92805   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92805  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92805
Splice isoforms : SwissVarQ92805
PhosPhoSitePlusQ92805
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)   
Domains : Interpro (EBI)GRIP_dom   
Domain families : Pfam (Sanger)GRIP (PF01465)   
Domain families : Pfam (NCBI)pfam01465   
Domain families : Smart (EMBL)Grip (SM00755)  
Conserved Domain (NCBI)GOLGA1
DMDM Disease mutations2800
Blocks (Seattle)GOLGA1
SuperfamilyQ92805
Human Protein Atlas [tissue]ENSG00000136935-GOLGA1 [tissue]
Peptide AtlasQ92805
HPRD03934
IPIIPI00031115   IPI00976238   IPI00643215   IPI00645826   
Protein Interaction databases
DIP (DOE-UCLA)Q92805
IntAct (EBI)Q92805
FunCoupENSG00000136935
BioGRIDGOLGA1
STRING (EMBL)GOLGA1
ZODIACGOLGA1
Ontologies - Pathways
QuickGOQ92805
Ontology : AmiGOprotein targeting to Golgi  protein binding  Golgi apparatus  trans-Golgi network  cytosol  Golgi cisterna membrane  perinuclear region of cytoplasm  
Ontology : EGO-EBIprotein targeting to Golgi  protein binding  Golgi apparatus  trans-Golgi network  cytosol  Golgi cisterna membrane  perinuclear region of cytoplasm  
NDEx NetworkGOLGA1
Atlas of Cancer Signalling NetworkGOLGA1
Wikipedia pathwaysGOLGA1
Orthology - Evolution
OrthoDB2800
GeneTree (enSembl)ENSG00000136935
Phylogenetic Trees/Animal Genes : TreeFamGOLGA1
HOVERGENQ92805
HOGENOMQ92805
Homologs : HomoloGeneGOLGA1
Homology/Alignments : Family Browser (UCSC)GOLGA1
Gene fusions - Rearrangements
Tumor Fusion PortalGOLGA1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA1
dbVarGOLGA1
ClinVarGOLGA1
1000_GenomesGOLGA1 
Exome Variant ServerGOLGA1
ExAC (Exome Aggregation Consortium)ENSG00000136935
GNOMAD BrowserENSG00000136935
Genetic variants : HAPMAP2800
Genomic Variants (DGV)GOLGA1 [DGVbeta]
DECIPHERGOLGA1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA1 
Mutations
ICGC Data PortalGOLGA1 
TCGA Data PortalGOLGA1 
Broad Tumor PortalGOLGA1
OASIS PortalGOLGA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA1
DgiDB (Drug Gene Interaction Database)GOLGA1
DoCM (Curated mutations)GOLGA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA1 (select a term)
intoGenGOLGA1
Cancer3DGOLGA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602502   
Orphanet
DisGeNETGOLGA1
MedgenGOLGA1
Genetic Testing Registry GOLGA1
NextProtQ92805 [Medical]
TSGene2800
GENETestsGOLGA1
Target ValidationGOLGA1
Huge Navigator GOLGA1 [HugePedia]
snp3D : Map Gene to Disease2800
BioCentury BCIQGOLGA1
ClinGenGOLGA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2800
Chemical/Pharm GKB GenePA28804
Clinical trialGOLGA1
Miscellaneous
canSAR (ICR)GOLGA1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA1
EVEXGOLGA1
GoPubMedGOLGA1
iHOPGOLGA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:14:58 CET 2017

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