Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GOLGA2 (golgin A2)

Identity

Alias_namesgolgi autoantigen
Alias_symbol (synonym)GM130
golgin-95
Other alias
HGNC (Hugo) GOLGA2
LocusID (NCBI) 2801
Atlas_Id 53275
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128255829 and ends at 128275989 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		GOLGA2 (9q34.11) / ABCA8 (17q24.2)GOLGA2 (9q34.11) / FN3KRP (17q25.3)GOLGA2 (9q34.11) / FOXA2 (20p11.21)
GOLGA2 (9q34.11) / RPS8 (1p34.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GOLGA2   4425
Cards
Entrez_Gene (NCBI)GOLGA2  2801  golgin A2
AliasesGM130
GeneCards (Weizmann)GOLGA2
Ensembl hg19 (Hinxton)ENSG00000167110 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167110 [Gene_View]  chr9:128255829-128275989 [Contig_View]  GOLGA2 [Vega]
ICGC DataPortalENSG00000167110
TCGA cBioPortalGOLGA2
AceView (NCBI)GOLGA2
Genatlas (Paris)GOLGA2
WikiGenes2801
SOURCE (Princeton)GOLGA2
Genetics Home Reference (NIH)GOLGA2
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA2  -     chr9:128255829-128275989 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA2  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblGOLGA2 - 9q34.11 [CytoView hg19]  GOLGA2 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIGOLGA2 [Mapview hg19]  GOLGA2 [Mapview hg38]
OMIM602580   
Gene and transcription
Genbank (Entrez)AF248953 AW583140 AY823636 BC006381 BC014188
RefSeq transcript (Entrez)NM_004486
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA2
Cluster EST : UnigeneHs.155827 [ NCBI ]
CGAP (NCI)Hs.155827
Alternative Splicing GalleryENSG00000167110
Gene ExpressionGOLGA2 [ NCBI-GEO ]   GOLGA2 [ EBI - ARRAY_EXPRESS ]   GOLGA2 [ SEEK ]   GOLGA2 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2801
GTEX Portal (Tissue expression)GOLGA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08379   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08379  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08379
Splice isoforms : SwissVarQ08379
PhosPhoSitePlusQ08379
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA2
DMDM Disease mutations2801
Blocks (Seattle)GOLGA2
PDB (SRS)4REY   
PDB (PDBSum)4REY   
PDB (IMB)4REY   
PDB (RSDB)4REY   
Structural Biology KnowledgeBase4REY   
SCOP (Structural Classification of Proteins)4REY   
CATH (Classification of proteins structures)4REY   
SuperfamilyQ08379
Human Protein AtlasENSG00000167110
Peptide AtlasQ08379
HPRD03989
IPIIPI00943357   IPI00413895   IPI01012983   IPI00156651   IPI00921934   IPI00921970   
Protein Interaction databases
DIP (DOE-UCLA)Q08379
IntAct (EBI)Q08379
FunCoupENSG00000167110
BioGRIDGOLGA2
STRING (EMBL)GOLGA2
ZODIACGOLGA2
Ontologies - Pathways
QuickGOQ08379
Ontology : AmiGOGolgi cis cisterna  Golgi membrane  spindle pole  protein binding  nucleus  Golgi apparatus  cis-Golgi network  microtubule  protein glycosylation  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  microtubule nucleation  microtubule nucleation  centrosome cycle  centrosome cycle  microtubule binding  asymmetric cell division  negative regulation of autophagy  protein kinase binding  syntaxin binding  ER to Golgi transport vesicle  negative regulation of protein binding  Golgi cisterna membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  cadherin binding  COPII vesicle coating  spindle assembly  protein homotetramerization  positive regulation of protein glycosylation  importin-alpha family protein binding  mitotic spindle  Golgi ribbon formation  Golgi disassembly  spindle assembly involved in meiosis  mitotic spindle assembly  positive regulation of ubiquitin protein ligase activity  
Ontology : EGO-EBIGolgi cis cisterna  Golgi membrane  spindle pole  protein binding  nucleus  Golgi apparatus  cis-Golgi network  microtubule  protein glycosylation  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  microtubule nucleation  microtubule nucleation  centrosome cycle  centrosome cycle  microtubule binding  asymmetric cell division  negative regulation of autophagy  protein kinase binding  syntaxin binding  ER to Golgi transport vesicle  negative regulation of protein binding  Golgi cisterna membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  cadherin binding  COPII vesicle coating  spindle assembly  protein homotetramerization  positive regulation of protein glycosylation  importin-alpha family protein binding  mitotic spindle  Golgi ribbon formation  Golgi disassembly  spindle assembly involved in meiosis  mitotic spindle assembly  positive regulation of ubiquitin protein ligase activity  
NDEx NetworkGOLGA2
Atlas of Cancer Signalling NetworkGOLGA2
Wikipedia pathwaysGOLGA2
Orthology - Evolution
OrthoDB2801
GeneTree (enSembl)ENSG00000167110
Phylogenetic Trees/Animal Genes : TreeFamGOLGA2
HOVERGENQ08379
HOGENOMQ08379
Homologs : HomoloGeneGOLGA2
Homology/Alignments : Family Browser (UCSC)GOLGA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA2
dbVarGOLGA2
ClinVarGOLGA2
1000_GenomesGOLGA2 
Exome Variant ServerGOLGA2
ExAC (Exome Aggregation Consortium)GOLGA2 (select the gene name)
Genetic variants : HAPMAP2801
Genomic Variants (DGV)GOLGA2 [DGVbeta]
DECIPHERGOLGA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA2 
Mutations
ICGC Data PortalGOLGA2 
TCGA Data PortalGOLGA2 
Broad Tumor PortalGOLGA2
OASIS PortalGOLGA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA2
DgiDB (Drug Gene Interaction Database)GOLGA2
DoCM (Curated mutations)GOLGA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA2 (select a term)
intoGenGOLGA2
Cancer3DGOLGA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602580   
Orphanet
MedgenGOLGA2
Genetic Testing Registry GOLGA2
NextProtQ08379 [Medical]
TSGene2801
GENETestsGOLGA2
Target ValidationGOLGA2
Huge Navigator GOLGA2 [HugePedia]
snp3D : Map Gene to Disease2801
BioCentury BCIQGOLGA2
ClinGenGOLGA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2801
Chemical/Pharm GKB GenePA28805
Clinical trialGOLGA2
Miscellaneous
canSAR (ICR)GOLGA2 (select the gene name)
Probes
Litterature
PubMed100 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA2
EVEXGOLGA2
GoPubMedGOLGA2
iHOPGOLGA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:10:14 CEST 2017
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.