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GOLGA2P5 (golgin A2 pseudogene 5)

Identity

Alias_namesGOLGA2L1
GOLGA2B
golgi autoantigen, golgin subfamily a, 2-like 1
golgin A2-like 1
golgin A2 family, member B
Alias_symbol (synonym)DKFZp434M0331
Other alias
HGNC (Hugo) GOLGA2P5
LocusID (NCBI) 55592
Atlas_Id 63873
Location 12q23.1  [Link to chromosome band 12q23]
Location_base_pair Starts at 100156415 and ends at 100173293 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA2P5   25315
Cards
Entrez_Gene (NCBI)GOLGA2P5  55592  golgin A2 pseudogene 5
AliasesGOLGA2B; GOLGA2L1
GeneCards (Weizmann)GOLGA2P5
Ensembl hg19 (Hinxton)ENSG00000238105 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000238105 [Gene_View]  chr12:100156415-100173293 [Contig_View]  GOLGA2P5 [Vega]
ICGC DataPortalENSG00000238105
TCGA cBioPortalGOLGA2P5
AceView (NCBI)GOLGA2P5
Genatlas (Paris)GOLGA2P5
WikiGenes55592
SOURCE (Princeton)GOLGA2P5
Genetics Home Reference (NIH)GOLGA2P5
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA2P5  -     chr12:100156415-100173293 -  12q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA2P5  -     12q23.1   [Description]    (hg19-Feb_2009)
EnsemblGOLGA2P5 - 12q23.1 [CytoView hg19]  GOLGA2P5 - 12q23.1 [CytoView hg38]
Mapping of homologs : NCBIGOLGA2P5 [Mapview hg19]  GOLGA2P5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF217995 AK124885 AK131330 AL137680 AL137720
RefSeq transcript (Entrez)NM_017600
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA2P5
Cluster EST : UnigeneHs.645240 [ NCBI ]
CGAP (NCI)Hs.645240
Alternative Splicing GalleryENSG00000238105
Gene ExpressionGOLGA2P5 [ NCBI-GEO ]   GOLGA2P5 [ EBI - ARRAY_EXPRESS ]   GOLGA2P5 [ SEEK ]   GOLGA2P5 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA2P5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55592
GTEX Portal (Tissue expression)GOLGA2P5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBQ8
Splice isoforms : SwissVarQ9HBQ8
PhosPhoSitePlusQ9HBQ8
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA2P5
DMDM Disease mutations55592
Blocks (Seattle)GOLGA2P5
SuperfamilyQ9HBQ8
Human Protein AtlasENSG00000238105
Peptide AtlasQ9HBQ8
HPRD13195
IPIIPI00385650   IPI00745178   IPI00442212   IPI00940468   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBQ8
IntAct (EBI)Q9HBQ8
FunCoupENSG00000238105
BioGRIDGOLGA2P5
STRING (EMBL)GOLGA2P5
ZODIACGOLGA2P5
Ontologies - Pathways
QuickGOQ9HBQ8
Ontology : AmiGOGolgi apparatus  
Ontology : EGO-EBIGolgi apparatus  
NDEx NetworkGOLGA2P5
Atlas of Cancer Signalling NetworkGOLGA2P5
Wikipedia pathwaysGOLGA2P5
Orthology - Evolution
OrthoDB55592
GeneTree (enSembl)ENSG00000238105
Phylogenetic Trees/Animal Genes : TreeFamGOLGA2P5
HOVERGENQ9HBQ8
HOGENOMQ9HBQ8
Homologs : HomoloGeneGOLGA2P5
Homology/Alignments : Family Browser (UCSC)GOLGA2P5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA2P5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA2P5
dbVarGOLGA2P5
ClinVarGOLGA2P5
1000_GenomesGOLGA2P5 
Exome Variant ServerGOLGA2P5
ExAC (Exome Aggregation Consortium)GOLGA2P5 (select the gene name)
Genetic variants : HAPMAP55592
Genomic Variants (DGV)GOLGA2P5 [DGVbeta]
DECIPHERGOLGA2P5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA2P5 
Mutations
ICGC Data PortalGOLGA2P5 
TCGA Data PortalGOLGA2P5 
Broad Tumor PortalGOLGA2P5
OASIS PortalGOLGA2P5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGOLGA2P5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA2P5
DgiDB (Drug Gene Interaction Database)GOLGA2P5
DoCM (Curated mutations)GOLGA2P5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA2P5 (select a term)
intoGenGOLGA2P5
Cancer3DGOLGA2P5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA2P5
Genetic Testing Registry GOLGA2P5
NextProtQ9HBQ8 [Medical]
TSGene55592
GENETestsGOLGA2P5
Target ValidationGOLGA2P5
Huge Navigator GOLGA2P5 [HugePedia]
snp3D : Map Gene to Disease55592
BioCentury BCIQGOLGA2P5
ClinGenGOLGA2P5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55592
Chemical/Pharm GKB GenePA165512779
Clinical trialGOLGA2P5
Miscellaneous
canSAR (ICR)GOLGA2P5 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA2P5
EVEXGOLGA2P5
GoPubMedGOLGA2P5
iHOPGOLGA2P5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:54 CEST 2017

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