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GOLGA3 (golgin A3)

Identity

Alias_namesgolgi autoantigen
Alias_symbol (synonym)golgin-160
GCP170
MEA-2
Other alias
HGNC (Hugo) GOLGA3
LocusID (NCBI) 2802
Atlas_Id 49866
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 132783868 and ends at 132828840 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COCH (14q12) / GOLGA3 (12q24.33)GOLGA3 (12q24.33) / ARHGAP10 (4q31.23)GOLGA3 (12q24.33) / ARL17A (17q21.31)
GOLGA3 (12q24.33) / AVL9 (7p14.3)GOLGA3 (12q24.33) / CHFR (12q24.33)GOLGA3 (12q24.33) / HUWE1 (Xp11.22)
GOLGA3 (12q24.33) / IGFBP5 (2q35)GOLGA3 (12q24.33) / PIK3R5 (17p13.1)GOLGA3 (12q24.33) / RPS11 (19q13.33)
GOLGA3 (12q24.33) / ZC3H15 (2q32.1)PAM (5q21.1) / GOLGA3 (12q24.33)SHISA5 (3p21.31) / GOLGA3 (12q24.33)
GOLGA3 12q24.33 / CHFR 12q24.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA3   4426
Cards
Entrez_Gene (NCBI)GOLGA3  2802  golgin A3
AliasesGCP170; MEA-2
GeneCards (Weizmann)GOLGA3
Ensembl hg19 (Hinxton)ENSG00000090615 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000090615 [Gene_View]  chr12:132783868-132828840 [Contig_View]  GOLGA3 [Vega]
ICGC DataPortalENSG00000090615
TCGA cBioPortalGOLGA3
AceView (NCBI)GOLGA3
Genatlas (Paris)GOLGA3
WikiGenes2802
SOURCE (Princeton)GOLGA3
Genetics Home Reference (NIH)GOLGA3
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA3  -     chr12:132783868-132828840 -  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA3  -     12q24.33   [Description]    (hg19-Feb_2009)
EnsemblGOLGA3 - 12q24.33 [CytoView hg19]  GOLGA3 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBIGOLGA3 [Mapview hg19]  GOLGA3 [Mapview hg38]
OMIM602581   
Gene and transcription
Genbank (Entrez)AB027133 AF485338 AK092223 BC037937 BC060826
RefSeq transcript (Entrez)NM_001172557 NM_005895
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA3
Cluster EST : UnigeneHs.507333 [ NCBI ]
CGAP (NCI)Hs.507333
Alternative Splicing GalleryENSG00000090615
Gene ExpressionGOLGA3 [ NCBI-GEO ]   GOLGA3 [ EBI - ARRAY_EXPRESS ]   GOLGA3 [ SEEK ]   GOLGA3 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2802
GTEX Portal (Tissue expression)GOLGA3
Human Protein AtlasENSG00000090615-GOLGA3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08378   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08378  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08378
Splice isoforms : SwissVarQ08378
PhosPhoSitePlusQ08378
Domains : Interpro (EBI)Golga3   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GOLGA3
DMDM Disease mutations2802
Blocks (Seattle)GOLGA3
SuperfamilyQ08378
Human Protein Atlas [tissue]ENSG00000090615-GOLGA3 [tissue]
Peptide AtlasQ08378
HPRD03990
IPIIPI00305267   IPI00944623   IPI00976434   IPI00333419   
Protein Interaction databases
DIP (DOE-UCLA)Q08378
IntAct (EBI)Q08378
FunCoupENSG00000090615
BioGRIDGOLGA3
STRING (EMBL)GOLGA3
ZODIACGOLGA3
Ontologies - Pathways
QuickGOQ08378
Ontology : AmiGOGolgi membrane  transporter activity  protein binding  nucleus  nucleoplasm  nucleolus  Golgi apparatus  cytosol  intra-Golgi vesicle-mediated transport  spermatogenesis  membrane  Golgi transport complex  Golgi cisterna membrane  cadherin binding  extrinsic component of Golgi membrane  
Ontology : EGO-EBIGolgi membrane  transporter activity  protein binding  nucleus  nucleoplasm  nucleolus  Golgi apparatus  cytosol  intra-Golgi vesicle-mediated transport  spermatogenesis  membrane  Golgi transport complex  Golgi cisterna membrane  cadherin binding  extrinsic component of Golgi membrane  
NDEx NetworkGOLGA3
Atlas of Cancer Signalling NetworkGOLGA3
Wikipedia pathwaysGOLGA3
Orthology - Evolution
OrthoDB2802
GeneTree (enSembl)ENSG00000090615
Phylogenetic Trees/Animal Genes : TreeFamGOLGA3
HOVERGENQ08378
HOGENOMQ08378
Homologs : HomoloGeneGOLGA3
Homology/Alignments : Family Browser (UCSC)GOLGA3
Gene fusions - Rearrangements
Fusion : MitelmanGOLGA3/CHFR [12q24.33/12q24.33]  
Fusion: TCGA_MDACCGOLGA3 12q24.33 CHFR 12q24.33 LUSC
Tumor Fusion PortalGOLGA3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA3
dbVarGOLGA3
ClinVarGOLGA3
1000_GenomesGOLGA3 
Exome Variant ServerGOLGA3
ExAC (Exome Aggregation Consortium)ENSG00000090615
GNOMAD BrowserENSG00000090615
Genetic variants : HAPMAP2802
Genomic Variants (DGV)GOLGA3 [DGVbeta]
DECIPHERGOLGA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA3 
Mutations
ICGC Data PortalGOLGA3 
TCGA Data PortalGOLGA3 
Broad Tumor PortalGOLGA3
OASIS PortalGOLGA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA3
DgiDB (Drug Gene Interaction Database)GOLGA3
DoCM (Curated mutations)GOLGA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA3 (select a term)
intoGenGOLGA3
Cancer3DGOLGA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602581   
Orphanet
DisGeNETGOLGA3
MedgenGOLGA3
Genetic Testing Registry GOLGA3
NextProtQ08378 [Medical]
TSGene2802
GENETestsGOLGA3
Target ValidationGOLGA3
Huge Navigator GOLGA3 [HugePedia]
snp3D : Map Gene to Disease2802
BioCentury BCIQGOLGA3
ClinGenGOLGA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2802
Chemical/Pharm GKB GenePA28807
Clinical trialGOLGA3
Miscellaneous
canSAR (ICR)GOLGA3 (select the gene name)
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA3
EVEXGOLGA3
GoPubMedGOLGA3
iHOPGOLGA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:14:58 CET 2017

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