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GOLGA4 (golgin A4)

Identity

Alias_namesgolgi autoantigen
Alias_symbol (synonym)GOLG
GCP2
p230
golgin-240
Other aliasCRPF46
MU-RMS-40.18
HGNC (Hugo) GOLGA4
LocusID (NCBI) 2803
Atlas_Id 40734
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 37243191 and ends at 37366879 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABI2 (2q33.2) / GOLGA4 (3p22.2)GOLGA4 (3p22.2) / ATXN1 (6p22.3)GOLGA4 (3p22.2) / GOLGA4 (3p22.2)
GOLGA4 (3p22.2) / GRHL1 (2p25.1)GOLGA4 (3p22.2) / HSPA8 (11q24.1)GOLGA4 (3p22.2) / MLH1 (3p22.2)
GOLGA4 (3p22.2) / PDGFRB (5q32)GOLGA4 (3p22.2) / RBM27 (5q32)GOLGA4 (3p22.2) / TMEM87A (15q15.1)
MIR548O2 (8p12) / GOLGA4 (3p22.2)SLC4A4 (4q13.3) / GOLGA4 (3p22.2)GOLGA4 3p22.2 / HSPA8 11q24.1
GOLGA4 3p22.2 / MLH1 3p22.2SLC4A4 4q13.3 / GOLGA4 3p22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA4   4427
Cards
Entrez_Gene (NCBI)GOLGA4  2803  golgin A4
AliasesCRPF46; GCP2; GOLG; MU-RMS-40.18; 
p230
GeneCards (Weizmann)GOLGA4
Ensembl hg19 (Hinxton)ENSG00000144674 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144674 [Gene_View]  chr3:37243191-37366879 [Contig_View]  GOLGA4 [Vega]
ICGC DataPortalENSG00000144674
TCGA cBioPortalGOLGA4
AceView (NCBI)GOLGA4
Genatlas (Paris)GOLGA4
WikiGenes2803
SOURCE (Princeton)GOLGA4
Genetics Home Reference (NIH)GOLGA4
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA4  -     chr3:37243191-37366879 +  3p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA4  -     3p22.2   [Description]    (hg19-Feb_2009)
EnsemblGOLGA4 - 3p22.2 [CytoView hg19]  GOLGA4 - 3p22.2 [CytoView hg38]
Mapping of homologs : NCBIGOLGA4 [Mapview hg19]  GOLGA4 [Mapview hg38]
OMIM602509   
Gene and transcription
Genbank (Entrez)AA779873 AB209693 AF273047 AK022389 AK290550
RefSeq transcript (Entrez)NM_001172713 NM_002078
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA4
Cluster EST : UnigeneHs.344151 [ NCBI ]
CGAP (NCI)Hs.344151
Alternative Splicing GalleryENSG00000144674
Gene ExpressionGOLGA4 [ NCBI-GEO ]   GOLGA4 [ EBI - ARRAY_EXPRESS ]   GOLGA4 [ SEEK ]   GOLGA4 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2803
GTEX Portal (Tissue expression)GOLGA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13439   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13439  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13439
Splice isoforms : SwissVarQ13439
PhosPhoSitePlusQ13439
Domaine pattern : Prosite (Expaxy)GRIP (PS50913)   
Domains : Interpro (EBI)GRIP_dom   
Domain families : Pfam (Sanger)GRIP (PF01465)   
Domain families : Pfam (NCBI)pfam01465   
Domain families : Smart (EMBL)Grip (SM00755)  
Conserved Domain (NCBI)GOLGA4
DMDM Disease mutations2803
Blocks (Seattle)GOLGA4
PDB (SRS)1R4A    1UPT   
PDB (PDBSum)1R4A    1UPT   
PDB (IMB)1R4A    1UPT   
PDB (RSDB)1R4A    1UPT   
Structural Biology KnowledgeBase1R4A    1UPT   
SCOP (Structural Classification of Proteins)1R4A    1UPT   
CATH (Classification of proteins structures)1R4A    1UPT   
SuperfamilyQ13439
Human Protein AtlasENSG00000144674
Peptide AtlasQ13439
HPRD03941
IPIIPI00013272   IPI01009738   IPI00220522   IPI00655762   IPI00926736   IPI00927872   IPI00927614   IPI00925587   IPI00925831   
Protein Interaction databases
DIP (DOE-UCLA)Q13439
IntAct (EBI)Q13439
FunCoupENSG00000144674
BioGRIDGOLGA4
STRING (EMBL)GOLGA4
ZODIACGOLGA4
Ontologies - Pathways
QuickGOQ13439
Ontology : AmiGOprotein targeting to Golgi  Golgi membrane  protein binding  cytoplasm  Golgi apparatus  trans-Golgi network  cytosol  cytosol  vesicle-mediated transport  Golgi to plasma membrane protein transport  Golgi to plasma membrane protein transport  intracellular membrane-bounded organelle  positive regulation of axon extension  GTPase binding  extracellular exosome  
Ontology : EGO-EBIprotein targeting to Golgi  Golgi membrane  protein binding  cytoplasm  Golgi apparatus  trans-Golgi network  cytosol  cytosol  vesicle-mediated transport  Golgi to plasma membrane protein transport  Golgi to plasma membrane protein transport  intracellular membrane-bounded organelle  positive regulation of axon extension  GTPase binding  extracellular exosome  
NDEx NetworkGOLGA4
Atlas of Cancer Signalling NetworkGOLGA4
Wikipedia pathwaysGOLGA4
Orthology - Evolution
OrthoDB2803
GeneTree (enSembl)ENSG00000144674
Phylogenetic Trees/Animal Genes : TreeFamGOLGA4
HOVERGENQ13439
HOGENOMQ13439
Homologs : HomoloGeneGOLGA4
Homology/Alignments : Family Browser (UCSC)GOLGA4
Gene fusions - Rearrangements
Fusion : MitelmanGOLGA4/HSPA8 [3p22.2/11q24.1]  
Fusion : MitelmanGOLGA4/MLH1 [3p22.2/3p22.2]  [t(3;3)(p22;p22)]  
Fusion : MitelmanGOLGA4/PDGFRB [3p22.2/5q32]  [t(3;5)(p22;q32)]  
Fusion : MitelmanSLC4A4/GOLGA4 [4q13.3/3p22.2]  [t(3;4)(p22;q13)]  
Fusion: TCGAGOLGA4 3p22.2 HSPA8 11q24.1 BRCA
Fusion: TCGAGOLGA4 3p22.2 MLH1 3p22.2 BRCA PRAD
Fusion: TCGASLC4A4 4q13.3 GOLGA4 3p22.2 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA4
dbVarGOLGA4
ClinVarGOLGA4
1000_GenomesGOLGA4 
Exome Variant ServerGOLGA4
ExAC (Exome Aggregation Consortium)GOLGA4 (select the gene name)
Genetic variants : HAPMAP2803
Genomic Variants (DGV)GOLGA4 [DGVbeta]
DECIPHERGOLGA4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA4 
Mutations
ICGC Data PortalGOLGA4 
TCGA Data PortalGOLGA4 
Broad Tumor PortalGOLGA4
OASIS PortalGOLGA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA4
DgiDB (Drug Gene Interaction Database)GOLGA4
DoCM (Curated mutations)GOLGA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA4 (select a term)
intoGenGOLGA4
Cancer3DGOLGA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602509   
Orphanet
MedgenGOLGA4
Genetic Testing Registry GOLGA4
NextProtQ13439 [Medical]
TSGene2803
GENETestsGOLGA4
Target ValidationGOLGA4
Huge Navigator GOLGA4 [HugePedia]
snp3D : Map Gene to Disease2803
BioCentury BCIQGOLGA4
ClinGenGOLGA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2803
Chemical/Pharm GKB GenePA28808
Clinical trialGOLGA4
Miscellaneous
canSAR (ICR)GOLGA4 (select the gene name)
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA4
EVEXGOLGA4
GoPubMedGOLGA4
iHOPGOLGA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:10:14 CEST 2017

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