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GOLGA5 (golgin A5)

Identity

Alias_namesgolgi autoantigen
Alias_symbol (synonym)ret-II
golgin-84
rfg5
GOLIM5
Other aliasRFG5
HGNC (Hugo) GOLGA5
LocusID (NCBI) 9950
Atlas_Id 501
Location 14q32.12  [Link to chromosome band 14q32]
Location_base_pair Starts at 92794231 and ends at 92839961 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GOLGA5 (14q32.12) / GOLGA5 (14q32.12)GOLGA5 (14q32.12) / RET (10q11.21)GOLGA5 (14q32.12) / RIN3 (14q32.12)
RET (10q11.21) / GOLGA5 (14q32.12)SOX30 (5q33.3) / GOLGA5 (14q32.12)GOLGA5 14q32.12 / RET 10q11.21
RET 10q11.21 / GOLGA5 14q32.12GOLGA5 14q32.12 / RIN3 14q32.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA5   4428
Cards
Entrez_Gene (NCBI)GOLGA5  9950  golgin A5
AliasesGOLIM5; RFG5; ret-II
GeneCards (Weizmann)GOLGA5
Ensembl hg19 (Hinxton)ENSG00000066455 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000066455 [Gene_View]  chr14:92794231-92839961 [Contig_View]  GOLGA5 [Vega]
ICGC DataPortalENSG00000066455
TCGA cBioPortalGOLGA5
AceView (NCBI)GOLGA5
Genatlas (Paris)GOLGA5
WikiGenes9950
SOURCE (Princeton)GOLGA5
Genetics Home Reference (NIH)GOLGA5
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA5  -     chr14:92794231-92839961 +  14q32.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA5  -     14q32.12   [Description]    (hg19-Feb_2009)
EnsemblGOLGA5 - 14q32.12 [CytoView hg19]  GOLGA5 - 14q32.12 [CytoView hg38]
Mapping of homologs : NCBIGOLGA5 [Mapview hg19]  GOLGA5 [Mapview hg38]
OMIM188550   606918   
Gene and transcription
Genbank (Entrez)AF085199 AI288133 AJ132949 AK293077 AK303789
RefSeq transcript (Entrez)NM_005113
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA5
Cluster EST : UnigeneHs.104320 [ NCBI ]
CGAP (NCI)Hs.104320
Alternative Splicing GalleryENSG00000066455
Gene ExpressionGOLGA5 [ NCBI-GEO ]   GOLGA5 [ EBI - ARRAY_EXPRESS ]   GOLGA5 [ SEEK ]   GOLGA5 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9950
GTEX Portal (Tissue expression)GOLGA5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBA6
Splice isoforms : SwissVarQ8TBA6
PhosPhoSitePlusQ8TBA6
Domains : Interpro (EBI)Golgin_subfamily_A_member_5   
Domain families : Pfam (Sanger)Golgin_A5 (PF09787)   
Domain families : Pfam (NCBI)pfam09787   
Conserved Domain (NCBI)GOLGA5
DMDM Disease mutations9950
Blocks (Seattle)GOLGA5
SuperfamilyQ8TBA6
Human Protein AtlasENSG00000066455
Peptide AtlasQ8TBA6
HPRD06079
IPIIPI00294065   IPI00333637   IPI00908497   IPI01026306   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBA6
IntAct (EBI)Q8TBA6
FunCoupENSG00000066455
BioGRIDGOLGA5
STRING (EMBL)GOLGA5
ZODIACGOLGA5
Ontologies - Pathways
QuickGOQ8TBA6
Ontology : AmiGOGolgi membrane  Golgi membrane  retrograde transport, vesicle recycling within Golgi  Golgi apparatus  cis-Golgi network  Golgi organization  membrane  integral component of membrane  Rab GTPase binding  transport vesicle  Golgi cisterna  protein homodimerization activity  Golgi vesicle transport  
Ontology : EGO-EBIGolgi membrane  Golgi membrane  retrograde transport, vesicle recycling within Golgi  Golgi apparatus  cis-Golgi network  Golgi organization  membrane  integral component of membrane  Rab GTPase binding  transport vesicle  Golgi cisterna  protein homodimerization activity  Golgi vesicle transport  
NDEx NetworkGOLGA5
Atlas of Cancer Signalling NetworkGOLGA5
Wikipedia pathwaysGOLGA5
Orthology - Evolution
OrthoDB9950
GeneTree (enSembl)ENSG00000066455
Phylogenetic Trees/Animal Genes : TreeFamGOLGA5
HOVERGENQ8TBA6
HOGENOMQ8TBA6
Homologs : HomoloGeneGOLGA5
Homology/Alignments : Family Browser (UCSC)GOLGA5
Gene fusions - Rearrangements
Fusion : MitelmanGOLGA5/RET [14q32.12/10q11.21]  
Fusion : MitelmanGOLGA5/RIN3 [14q32.12/14q32.12]  [t(14;14)(q32;q32)]  
Fusion: TCGAGOLGA5 14q32.12 RIN3 14q32.12 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA5
dbVarGOLGA5
ClinVarGOLGA5
1000_GenomesGOLGA5 
Exome Variant ServerGOLGA5
ExAC (Exome Aggregation Consortium)GOLGA5 (select the gene name)
Genetic variants : HAPMAP9950
Genomic Variants (DGV)GOLGA5 [DGVbeta]
DECIPHERGOLGA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA5 
Mutations
ICGC Data PortalGOLGA5 
TCGA Data PortalGOLGA5 
Broad Tumor PortalGOLGA5
OASIS PortalGOLGA5 [ Somatic mutations - Copy number]
Cancer Gene: CensusGOLGA5 
Somatic Mutations in Cancer : COSMICGOLGA5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA5
intOGen PortalGOLGA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA5
DgiDB (Drug Gene Interaction Database)GOLGA5
DoCM (Curated mutations)GOLGA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA5 (select a term)
intoGenGOLGA5
Cancer3DGOLGA5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188550    606918   
Orphanet905   
MedgenGOLGA5
Genetic Testing Registry GOLGA5
NextProtQ8TBA6 [Medical]
TSGene9950
GENETestsGOLGA5
Huge Navigator GOLGA5 [HugePedia]
snp3D : Map Gene to Disease9950
BioCentury BCIQGOLGA5
ClinGenGOLGA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9950
Chemical/Pharm GKB GenePA28809
Clinical trialGOLGA5
Miscellaneous
canSAR (ICR)GOLGA5 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA5
EVEXGOLGA5
GoPubMedGOLGA5
iHOPGOLGA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:17:38 CEST 2017

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