Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GOLGA6A (golgin A6 family member A)

Identity

Alias_namesGOLGA6
golgi autoantigen, golgin subfamily a, member 6
golgi autoantigen, golgin subfamily a, 6
golgi autoantigen, golgin subfamily a, 6A
golgin A6 family, member A
Alias_symbol (synonym)GLP
Other alias
HGNC (Hugo) GOLGA6A
LocusID (NCBI) 342096
Atlas_Id 54022
Location 15q24.1  [Link to chromosome band 15q24]
Location_base_pair Starts at 74069857 and ends at 74082550 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PAX5 (9p13.2) / GOLGA6A (15q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(9;15)(p13;q24) PAX5/GOLGA6A


External links

Nomenclature
HGNC (Hugo)GOLGA6A   13567
Cards
Entrez_Gene (NCBI)GOLGA6A  342096  golgin A6 family member A
AliasesGLP; GOLGA6
GeneCards (Weizmann)GOLGA6A
Ensembl hg19 (Hinxton)ENSG00000159289 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159289 [Gene_View]  chr15:74069857-74082550 [Contig_View]  GOLGA6A [Vega]
ICGC DataPortalENSG00000159289
TCGA cBioPortalGOLGA6A
AceView (NCBI)GOLGA6A
Genatlas (Paris)GOLGA6A
WikiGenes342096
SOURCE (Princeton)GOLGA6A
Genetics Home Reference (NIH)GOLGA6A
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA6A  -     chr15:74069857-74082550 -  15q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA6A  -     15q24.1   [Description]    (hg19-Feb_2009)
EnsemblGOLGA6A - 15q24.1 [CytoView hg19]  GOLGA6A - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBIGOLGA6A [Mapview hg19]  GOLGA6A [Mapview hg38]
OMIM610288   
Gene and transcription
Genbank (Entrez)AF263742 AK292574 BC131515 BC156409 BC157132
RefSeq transcript (Entrez)NM_001038640
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA6A
Cluster EST : UnigeneHs.672474 [ NCBI ]
CGAP (NCI)Hs.672474
Alternative Splicing GalleryENSG00000159289
Gene ExpressionGOLGA6A [ NCBI-GEO ]   GOLGA6A [ EBI - ARRAY_EXPRESS ]   GOLGA6A [ SEEK ]   GOLGA6A [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA6A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342096
GTEX Portal (Tissue expression)GOLGA6A
Human Protein AtlasENSG00000159289-GOLGA6A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYA3
Splice isoforms : SwissVarQ9NYA3
PhosPhoSitePlusQ9NYA3
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA6A
DMDM Disease mutations342096
Blocks (Seattle)GOLGA6A
SuperfamilyQ9NYA3
Human Protein Atlas [tissue]ENSG00000159289-GOLGA6A [tissue]
Peptide AtlasQ9NYA3
IPIIPI00549634   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYA3
IntAct (EBI)Q9NYA3
FunCoupENSG00000159289
BioGRIDGOLGA6A
STRING (EMBL)GOLGA6A
ZODIACGOLGA6A
Ontologies - Pathways
QuickGOQ9NYA3
Ontology : AmiGOGolgi apparatus  
Ontology : EGO-EBIGolgi apparatus  
NDEx NetworkGOLGA6A
Atlas of Cancer Signalling NetworkGOLGA6A
Wikipedia pathwaysGOLGA6A
Orthology - Evolution
OrthoDB342096
GeneTree (enSembl)ENSG00000159289
Phylogenetic Trees/Animal Genes : TreeFamGOLGA6A
HOVERGENQ9NYA3
HOGENOMQ9NYA3
Homologs : HomoloGeneGOLGA6A
Homology/Alignments : Family Browser (UCSC)GOLGA6A
Gene fusions - Rearrangements
Fusion : MitelmanPAX5/GOLGA6A [9p13.2/15q24.1]  [t(9;15)(p13;q24)]  
Fusion: Tumor Portal GOLGA6A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA6A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA6A
dbVarGOLGA6A
ClinVarGOLGA6A
1000_GenomesGOLGA6A 
Exome Variant ServerGOLGA6A
ExAC (Exome Aggregation Consortium)ENSG00000159289
GNOMAD BrowserENSG00000159289
Genetic variants : HAPMAP342096
Genomic Variants (DGV)GOLGA6A [DGVbeta]
DECIPHERGOLGA6A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA6A 
Mutations
ICGC Data PortalGOLGA6A 
TCGA Data PortalGOLGA6A 
Broad Tumor PortalGOLGA6A
OASIS PortalGOLGA6A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA6A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA6A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA6A
DgiDB (Drug Gene Interaction Database)GOLGA6A
DoCM (Curated mutations)GOLGA6A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA6A (select a term)
intoGenGOLGA6A
Cancer3DGOLGA6A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610288   
Orphanet
MedgenGOLGA6A
Genetic Testing Registry GOLGA6A
NextProtQ9NYA3 [Medical]
TSGene342096
GENETestsGOLGA6A
Target ValidationGOLGA6A
Huge Navigator GOLGA6A [HugePedia]
snp3D : Map Gene to Disease342096
BioCentury BCIQGOLGA6A
ClinGenGOLGA6A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342096
Chemical/Pharm GKB GenePA38364
Clinical trialGOLGA6A
Miscellaneous
canSAR (ICR)GOLGA6A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA6A
EVEXGOLGA6A
GoPubMedGOLGA6A
iHOPGOLGA6A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:51:39 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.