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GOLGA6B (golgin A6 family member B)

Identity

Alias_namesgolgi autoantigen, golgin subfamily a, 6B
golgin A6 family, member B
Other aliasGOLGA
GOLGA6D
HGNC (Hugo) GOLGA6B
LocusID (NCBI) 55889
Atlas_Id 54023
Location 15q24.1  [Link to chromosome band 15q24]
Location_base_pair Starts at 72654697 and ends at 72667397 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA6B   32205
Cards
Entrez_Gene (NCBI)GOLGA6B  55889  golgin A6 family member B
AliasesGOLGA; GOLGA6D
GeneCards (Weizmann)GOLGA6B
Ensembl hg19 (Hinxton)ENSG00000215186 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215186 [Gene_View]  chr15:72654697-72667397 [Contig_View]  GOLGA6B [Vega]
ICGC DataPortalENSG00000215186
TCGA cBioPortalGOLGA6B
AceView (NCBI)GOLGA6B
Genatlas (Paris)GOLGA6B
WikiGenes55889
SOURCE (Princeton)GOLGA6B
Genetics Home Reference (NIH)GOLGA6B
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA6B  -     chr15:72654697-72667397 +  15q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA6B  -     15q24.1   [Description]    (hg19-Feb_2009)
EnsemblGOLGA6B - 15q24.1 [CytoView hg19]  GOLGA6B - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBIGOLGA6B [Mapview hg19]  GOLGA6B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC169329 BC169330
RefSeq transcript (Entrez)NM_018652
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA6B
Cluster EST : UnigeneHs.546408 [ NCBI ]
CGAP (NCI)Hs.546408
Alternative Splicing GalleryENSG00000215186
Gene ExpressionGOLGA6B [ NCBI-GEO ]   GOLGA6B [ EBI - ARRAY_EXPRESS ]   GOLGA6B [ SEEK ]   GOLGA6B [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55889
GTEX Portal (Tissue expression)GOLGA6B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDN3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDN3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDN3
Splice isoforms : SwissVarA6NDN3
PhosPhoSitePlusA6NDN3
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA6B
DMDM Disease mutations55889
Blocks (Seattle)GOLGA6B
SuperfamilyA6NDN3
Human Protein AtlasENSG00000215186
Peptide AtlasA6NDN3
HPRD17047
IPIIPI00719732   
Protein Interaction databases
DIP (DOE-UCLA)A6NDN3
IntAct (EBI)A6NDN3
FunCoupENSG00000215186
BioGRIDGOLGA6B
STRING (EMBL)GOLGA6B
ZODIACGOLGA6B
Ontologies - Pathways
QuickGOA6NDN3
Ontology : AmiGOGolgi apparatus  
Ontology : EGO-EBIGolgi apparatus  
NDEx NetworkGOLGA6B
Atlas of Cancer Signalling NetworkGOLGA6B
Wikipedia pathwaysGOLGA6B
Orthology - Evolution
OrthoDB55889
GeneTree (enSembl)ENSG00000215186
Phylogenetic Trees/Animal Genes : TreeFamGOLGA6B
HOVERGENA6NDN3
HOGENOMA6NDN3
Homologs : HomoloGeneGOLGA6B
Homology/Alignments : Family Browser (UCSC)GOLGA6B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA6B
dbVarGOLGA6B
ClinVarGOLGA6B
1000_GenomesGOLGA6B 
Exome Variant ServerGOLGA6B
ExAC (Exome Aggregation Consortium)GOLGA6B (select the gene name)
Genetic variants : HAPMAP55889
Genomic Variants (DGV)GOLGA6B [DGVbeta]
DECIPHERGOLGA6B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA6B 
Mutations
ICGC Data PortalGOLGA6B 
TCGA Data PortalGOLGA6B 
Broad Tumor PortalGOLGA6B
OASIS PortalGOLGA6B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA6B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA6B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA6B
DgiDB (Drug Gene Interaction Database)GOLGA6B
DoCM (Curated mutations)GOLGA6B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA6B (select a term)
intoGenGOLGA6B
Cancer3DGOLGA6B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA6B
Genetic Testing Registry GOLGA6B
NextProtA6NDN3 [Medical]
TSGene55889
GENETestsGOLGA6B
Target ValidationGOLGA6B
Huge Navigator GOLGA6B [HugePedia]
snp3D : Map Gene to Disease55889
BioCentury BCIQGOLGA6B
ClinGenGOLGA6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55889
Chemical/Pharm GKB GenePA162389878
Clinical trialGOLGA6B
Miscellaneous
canSAR (ICR)GOLGA6B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA6B
EVEXGOLGA6B
GoPubMedGOLGA6B
iHOPGOLGA6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:10:15 CEST 2017

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