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GOLGA6C (golgin A6 family member C)

Identity

Alias_namesgolgi autoantigen, golgin subfamily a, 6C
golgin A6 family, member C
Other alias-
HGNC (Hugo) GOLGA6C
LocusID (NCBI) 653641
Atlas_Id 54024
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 75258558 and ends at 75273455 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA6C   32206
Cards
Entrez_Gene (NCBI)GOLGA6C  653641  golgin A6 family member C
Aliases
GeneCards (Weizmann)GOLGA6C
Ensembl hg19 (Hinxton)ENSG00000167195 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167195 [Gene_View]  chr15:75258558-75273455 [Contig_View]  GOLGA6C [Vega]
ICGC DataPortalENSG00000167195
TCGA cBioPortalGOLGA6C
AceView (NCBI)GOLGA6C
Genatlas (Paris)GOLGA6C
WikiGenes653641
SOURCE (Princeton)GOLGA6C
Genetics Home Reference (NIH)GOLGA6C
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA6C  -     chr15:75258558-75273455 +  15q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA6C  -     15q24.2   [Description]    (hg19-Feb_2009)
EnsemblGOLGA6C - 15q24.2 [CytoView hg19]  GOLGA6C - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBIGOLGA6C [Mapview hg19]  GOLGA6C [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001164404
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA6C
Cluster EST : UnigeneHs.540230 [ NCBI ]
CGAP (NCI)Hs.540230
Alternative Splicing GalleryENSG00000167195
Gene ExpressionGOLGA6C [ NCBI-GEO ]   GOLGA6C [ EBI - ARRAY_EXPRESS ]   GOLGA6C [ SEEK ]   GOLGA6C [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA6C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653641
GTEX Portal (Tissue expression)GOLGA6C
Human Protein AtlasENSG00000167195-GOLGA6C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NDK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NDK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NDK9
Splice isoforms : SwissVarA6NDK9
PhosPhoSitePlusA6NDK9
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA6C
DMDM Disease mutations653641
Blocks (Seattle)GOLGA6C
SuperfamilyA6NDK9
Human Protein Atlas [tissue]ENSG00000167195-GOLGA6C [tissue]
Peptide AtlasA6NDK9
IPIIPI00455256   
Protein Interaction databases
DIP (DOE-UCLA)A6NDK9
IntAct (EBI)A6NDK9
FunCoupENSG00000167195
BioGRIDGOLGA6C
STRING (EMBL)GOLGA6C
ZODIACGOLGA6C
Ontologies - Pathways
QuickGOA6NDK9
Ontology : AmiGOGolgi apparatus  
Ontology : EGO-EBIGolgi apparatus  
NDEx NetworkGOLGA6C
Atlas of Cancer Signalling NetworkGOLGA6C
Wikipedia pathwaysGOLGA6C
Orthology - Evolution
OrthoDB653641
GeneTree (enSembl)ENSG00000167195
Phylogenetic Trees/Animal Genes : TreeFamGOLGA6C
HOVERGENA6NDK9
HOGENOMA6NDK9
Homologs : HomoloGeneGOLGA6C
Homology/Alignments : Family Browser (UCSC)GOLGA6C
Gene fusions - Rearrangements
Tumor Fusion PortalGOLGA6C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA6C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA6C
dbVarGOLGA6C
ClinVarGOLGA6C
1000_GenomesGOLGA6C 
Exome Variant ServerGOLGA6C
ExAC (Exome Aggregation Consortium)ENSG00000167195
GNOMAD BrowserENSG00000167195
Genetic variants : HAPMAP653641
Genomic Variants (DGV)GOLGA6C [DGVbeta]
DECIPHERGOLGA6C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA6C 
Mutations
ICGC Data PortalGOLGA6C 
TCGA Data PortalGOLGA6C 
Broad Tumor PortalGOLGA6C
OASIS PortalGOLGA6C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA6C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA6C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA6C
DgiDB (Drug Gene Interaction Database)GOLGA6C
DoCM (Curated mutations)GOLGA6C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA6C (select a term)
intoGenGOLGA6C
Cancer3DGOLGA6C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGOLGA6C
MedgenGOLGA6C
Genetic Testing Registry GOLGA6C
NextProtA6NDK9 [Medical]
TSGene653641
GENETestsGOLGA6C
Target ValidationGOLGA6C
Huge Navigator GOLGA6C [HugePedia]
snp3D : Map Gene to Disease653641
BioCentury BCIQGOLGA6C
ClinGenGOLGA6C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653641
Chemical/Pharm GKB GenePA162389919
Clinical trialGOLGA6C
Miscellaneous
canSAR (ICR)GOLGA6C (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA6C
EVEXGOLGA6C
GoPubMedGOLGA6C
iHOPGOLGA6C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:14:59 CET 2017

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