Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GOLGA6L10 (golgin A6 family-like 10)

Identity

Alias_namesGOLGA6L18
golgi autoantigen, golgin subfamily a, 6-like 10
golgin A6 family-like 18
Other alias
HGNC (Hugo) GOLGA6L10
LocusID (NCBI) 647042
Atlas_Id 63878
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82339996 and ends at 82349475 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA6L10   37228
Cards
Entrez_Gene (NCBI)GOLGA6L10  647042  golgin A6 family-like 10
AliasesGOLGA6L18
GeneCards (Weizmann)GOLGA6L10
Ensembl hg19 (Hinxton)ENSG00000278662 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278662 [Gene_View]  chr15:82339996-82349475 [Contig_View]  GOLGA6L10 [Vega]
ICGC DataPortalENSG00000278662
TCGA cBioPortalGOLGA6L10
AceView (NCBI)GOLGA6L10
Genatlas (Paris)GOLGA6L10
WikiGenes647042
SOURCE (Princeton)GOLGA6L10
Genetics Home Reference (NIH)GOLGA6L10
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA6L10  -     chr15:82339996-82349475 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA6L10  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblGOLGA6L10 - 15q25.2 [CytoView hg19]  GOLGA6L10 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIGOLGA6L10 [Mapview hg19]  GOLGA6L10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK302092 CR936602 DB042163 DB044490
RefSeq transcript (Entrez)NM_001164465 NM_001322400
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_006147 NT_187606
Consensus coding sequences : CCDS (NCBI)GOLGA6L10
Cluster EST : UnigeneHs.720685 [ NCBI ]
CGAP (NCI)Hs.720685
Alternative Splicing GalleryENSG00000278662
Gene ExpressionGOLGA6L10 [ NCBI-GEO ]   GOLGA6L10 [ EBI - ARRAY_EXPRESS ]   GOLGA6L10 [ SEEK ]   GOLGA6L10 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA6L10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)647042
GTEX Portal (Tissue expression)GOLGA6L10
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NI86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NI86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NI86
Splice isoforms : SwissVarA6NI86
PhosPhoSitePlusA6NI86
Domains : Interpro (EBI)GOLGA6L    Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA6L10
DMDM Disease mutations647042
Blocks (Seattle)GOLGA6L10
SuperfamilyA6NI86
Human Protein AtlasENSG00000278662
Peptide AtlasA6NI86
IPIIPI00896524   IPI00942380   
Protein Interaction databases
DIP (DOE-UCLA)A6NI86
IntAct (EBI)A6NI86
FunCoupENSG00000278662
BioGRIDGOLGA6L10
STRING (EMBL)GOLGA6L10
ZODIACGOLGA6L10
Ontologies - Pathways
QuickGOA6NI86
Ontology : AmiGOGolgi apparatus  
Ontology : EGO-EBIGolgi apparatus  
NDEx NetworkGOLGA6L10
Atlas of Cancer Signalling NetworkGOLGA6L10
Wikipedia pathwaysGOLGA6L10
Orthology - Evolution
OrthoDB647042
GeneTree (enSembl)ENSG00000278662
Phylogenetic Trees/Animal Genes : TreeFamGOLGA6L10
HOVERGENA6NI86
HOGENOMA6NI86
Homologs : HomoloGeneGOLGA6L10
Homology/Alignments : Family Browser (UCSC)GOLGA6L10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA6L10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA6L10
dbVarGOLGA6L10
ClinVarGOLGA6L10
1000_GenomesGOLGA6L10 
Exome Variant ServerGOLGA6L10
ExAC (Exome Aggregation Consortium)GOLGA6L10 (select the gene name)
Genetic variants : HAPMAP647042
Genomic Variants (DGV)GOLGA6L10 [DGVbeta]
DECIPHERGOLGA6L10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA6L10 
Mutations
ICGC Data PortalGOLGA6L10 
TCGA Data PortalGOLGA6L10 
Broad Tumor PortalGOLGA6L10
OASIS PortalGOLGA6L10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA6L10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA6L10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA6L10
DgiDB (Drug Gene Interaction Database)GOLGA6L10
DoCM (Curated mutations)GOLGA6L10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA6L10 (select a term)
intoGenGOLGA6L10
Cancer3DGOLGA6L10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA6L10
Genetic Testing Registry GOLGA6L10
NextProtA6NI86 [Medical]
TSGene647042
GENETestsGOLGA6L10
Huge Navigator GOLGA6L10 [HugePedia]
snp3D : Map Gene to Disease647042
BioCentury BCIQGOLGA6L10
ClinGenGOLGA6L10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD647042
Chemical/Pharm GKB GenePA165478685
Clinical trialGOLGA6L10
Miscellaneous
canSAR (ICR)GOLGA6L10 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA6L10
EVEXGOLGA6L10
GoPubMedGOLGA6L10
iHOPGOLGA6L10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:14:02 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.