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GOLGA6L2 (golgin A6 family-like 2)

Identity

Alias_namesgolgi autoantigen, golgin subfamily a, 6-like 2
Alias_symbol (synonym)CT105
FLJ36144
Other alias
HGNC (Hugo) GOLGA6L2
LocusID (NCBI) 283685
Atlas_Id 63880
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 23684533 and ends at 23692390 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA6L2   26695
Cards
Entrez_Gene (NCBI)GOLGA6L2  283685  golgin A6 family-like 2
AliasesCT105
GeneCards (Weizmann)GOLGA6L2
Ensembl hg19 (Hinxton)ENSG00000174450 [Gene_View]  chr15:23684533-23692390 [Contig_View]  GOLGA6L2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174450 [Gene_View]  chr15:23684533-23692390 [Contig_View]  GOLGA6L2 [Vega]
ICGC DataPortalENSG00000174450
TCGA cBioPortalGOLGA6L2
AceView (NCBI)GOLGA6L2
Genatlas (Paris)GOLGA6L2
WikiGenes283685
SOURCE (Princeton)GOLGA6L2
Genetics Home Reference (NIH)GOLGA6L2
Genomic and cartography
GoldenPath hg19 (UCSC)GOLGA6L2  -     chr15:23684533-23692390 -  15q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GOLGA6L2  -     15q11.2   [Description]    (hg38-Dec_2013)
EnsemblGOLGA6L2 - 15q11.2 [CytoView hg19]  GOLGA6L2 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBIGOLGA6L2 [Mapview hg19]  GOLGA6L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093463 AK097414 AK128822 BC129820 BC129821
RefSeq transcript (Entrez)NM_001304388 NM_182561
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929397
Consensus coding sequences : CCDS (NCBI)GOLGA6L2
Alternative Splicing GalleryENSG00000174450
Gene ExpressionGOLGA6L2 [ NCBI-GEO ]   GOLGA6L2 [ EBI - ARRAY_EXPRESS ]   GOLGA6L2 [ SEEK ]   GOLGA6L2 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA6L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283685
GTEX Portal (Tissue expression)GOLGA6L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9W4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N9W4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9W4
Splice isoforms : SwissVarQ8N9W4
PhosPhoSitePlusQ8N9W4
Domains : Interpro (EBI)GOLGA6L   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GOLGA6L2
DMDM Disease mutations283685
Blocks (Seattle)GOLGA6L2
SuperfamilyQ8N9W4
Human Protein AtlasENSG00000174450
Peptide AtlasQ8N9W4
HPRD08206
IPIIPI00167829   IPI00885134   IPI00827617   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9W4
IntAct (EBI)Q8N9W4
FunCoupENSG00000174450
BioGRIDGOLGA6L2
STRING (EMBL)GOLGA6L2
ZODIACGOLGA6L2
Ontologies - Pathways
QuickGOQ8N9W4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGOLGA6L2
Atlas of Cancer Signalling NetworkGOLGA6L2
Wikipedia pathwaysGOLGA6L2
Orthology - Evolution
OrthoDB283685
GeneTree (enSembl)ENSG00000174450
Phylogenetic Trees/Animal Genes : TreeFamGOLGA6L2
HOVERGENQ8N9W4
HOGENOMQ8N9W4
Homologs : HomoloGeneGOLGA6L2
Homology/Alignments : Family Browser (UCSC)GOLGA6L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA6L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA6L2
dbVarGOLGA6L2
ClinVarGOLGA6L2
1000_GenomesGOLGA6L2 
Exome Variant ServerGOLGA6L2
ExAC (Exome Aggregation Consortium)GOLGA6L2 (select the gene name)
Genetic variants : HAPMAP283685
Genomic Variants (DGV)GOLGA6L2 [DGVbeta]
DECIPHER (Syndromes)15:23684533-23692390  ENSG00000174450
CONAN: Copy Number AnalysisGOLGA6L2 
Mutations
ICGC Data PortalGOLGA6L2 
TCGA Data PortalGOLGA6L2 
Broad Tumor PortalGOLGA6L2
OASIS PortalGOLGA6L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA6L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA6L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA6L2
DgiDB (Drug Gene Interaction Database)GOLGA6L2
DoCM (Curated mutations)GOLGA6L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA6L2 (select a term)
intoGenGOLGA6L2
Cancer3DGOLGA6L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA6L2
Genetic Testing Registry GOLGA6L2
NextProtQ8N9W4 [Medical]
TSGene283685
GENETestsGOLGA6L2
Huge Navigator GOLGA6L2 [HugePedia]
snp3D : Map Gene to Disease283685
BioCentury BCIQGOLGA6L2
ClinGenGOLGA6L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283685
Chemical/Pharm GKB GenePA165478727
Clinical trialGOLGA6L2
Miscellaneous
canSAR (ICR)GOLGA6L2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA6L2
EVEXGOLGA6L2
GoPubMedGOLGA6L2
iHOPGOLGA6L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:24 CET 2017

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