Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GOLGA6L22 (golgin A6 family-like 22)

Identity

Other alias-
HGNC (Hugo) GOLGA6L22
LocusID (NCBI) 440243
Atlas_Id 63881
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 23127066 and ends at 23334210 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA6L22   50289
Cards
Entrez_Gene (NCBI)GOLGA6L22  440243  golgin A6 family-like 22
Aliases
GeneCards (Weizmann)GOLGA6L22
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:23127066-23334210 [Contig_View]  GOLGA6L22 [Vega]
TCGA cBioPortalGOLGA6L22
AceView (NCBI)GOLGA6L22
Genatlas (Paris)GOLGA6L22
WikiGenes440243
SOURCE (Princeton)GOLGA6L22
Genetics Home Reference (NIH)GOLGA6L22
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA6L22  -     chr15:23127066-23334210 -  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA6L22  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblGOLGA6L22 - 15q11.2 [CytoView hg19]  GOLGA6L22 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBIGOLGA6L22 [Mapview hg19]  GOLGA6L22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001271664
RefSeq genomic (Entrez)NC_000015 NT_187604
Consensus coding sequences : CCDS (NCBI)GOLGA6L22
Gene ExpressionGOLGA6L22 [ NCBI-GEO ]   GOLGA6L22 [ EBI - ARRAY_EXPRESS ]   GOLGA6L22 [ SEEK ]   GOLGA6L22 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA6L22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440243
GTEX Portal (Tissue expression)GOLGA6L22
Protein : pattern, domain, 3D structure
UniProt/SwissProtH0YM25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH0YM25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH0YM25
Splice isoforms : SwissVarH0YM25
PhosPhoSitePlusH0YM25
Domains : Interpro (EBI)GOLGA6L   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GOLGA6L22
DMDM Disease mutations440243
Blocks (Seattle)GOLGA6L22
SuperfamilyH0YM25
Peptide AtlasH0YM25
IPIIPI00941969   IPI00943610   
Protein Interaction databases
DIP (DOE-UCLA)H0YM25
IntAct (EBI)H0YM25
BioGRIDGOLGA6L22
STRING (EMBL)GOLGA6L22
ZODIACGOLGA6L22
Ontologies - Pathways
QuickGOH0YM25
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGOLGA6L22
Atlas of Cancer Signalling NetworkGOLGA6L22
Wikipedia pathwaysGOLGA6L22
Orthology - Evolution
OrthoDB440243
Phylogenetic Trees/Animal Genes : TreeFamGOLGA6L22
HOVERGENH0YM25
HOGENOMH0YM25
Homologs : HomoloGeneGOLGA6L22
Homology/Alignments : Family Browser (UCSC)GOLGA6L22
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA6L22 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA6L22
dbVarGOLGA6L22
ClinVarGOLGA6L22
1000_GenomesGOLGA6L22 
Exome Variant ServerGOLGA6L22
ExAC (Exome Aggregation Consortium)GOLGA6L22 (select the gene name)
Genetic variants : HAPMAP440243
Genomic Variants (DGV)GOLGA6L22 [DGVbeta]
DECIPHERGOLGA6L22 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA6L22 
Mutations
ICGC Data PortalGOLGA6L22 
TCGA Data PortalGOLGA6L22 
Broad Tumor PortalGOLGA6L22
OASIS PortalGOLGA6L22 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGOLGA6L22
BioMutasearch GOLGA6L22
DgiDB (Drug Gene Interaction Database)GOLGA6L22
DoCM (Curated mutations)GOLGA6L22 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA6L22 (select a term)
intoGenGOLGA6L22
Cancer3DGOLGA6L22(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA6L22
Genetic Testing Registry GOLGA6L22
NextProtH0YM25 [Medical]
TSGene440243
GENETestsGOLGA6L22
Target ValidationGOLGA6L22
Huge Navigator GOLGA6L22 [HugePedia]
snp3D : Map Gene to Disease440243
BioCentury BCIQGOLGA6L22
ClinGenGOLGA6L22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440243
Chemical/Pharm GKB GenePA166123691
Clinical trialGOLGA6L22
Miscellaneous
canSAR (ICR)GOLGA6L22 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA6L22
EVEXGOLGA6L22
GoPubMedGOLGA6L22
iHOPGOLGA6L22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:35 CEST 2017

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