Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GOLGA6L3 (golgin A6 family-like 3)

Identity

Alias_namesgolgi autoantigen, golgin subfamily a, 6-like 3
Other alias-
HGNC (Hugo) GOLGA6L3
LocusID (NCBI) 100133220
Atlas_Id 63882
Location 15q25.3  [Link to chromosome band 15q25]
Location_base_pair Starts at 85240410 and ends at 85247187 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA6L3   37441
Cards
Entrez_Gene (NCBI)GOLGA6L3  100133220  golgin A6 family-like 3
Aliases
GeneCards (Weizmann)GOLGA6L3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:85240410-85247187 [Contig_View]  GOLGA6L3 [Vega]
TCGA cBioPortalGOLGA6L3
AceView (NCBI)GOLGA6L3
Genatlas (Paris)GOLGA6L3
WikiGenes100133220
SOURCE (Princeton)GOLGA6L3
Genetics Home Reference (NIH)GOLGA6L3
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA6L3  -     chr15:85240410-85247187 +  15q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA6L3  -     15q25.3   [Description]    (hg19-Feb_2009)
EnsemblGOLGA6L3 - 15q25.3 [CytoView hg19]  GOLGA6L3 - 15q25.3 [CytoView hg38]
Mapping of homologs : NCBIGOLGA6L3 [Mapview hg19]  GOLGA6L3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301968 BC101293
RefSeq transcript (Entrez)NM_001310153
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA6L3
Cluster EST : UnigeneHs.454625 [ NCBI ]
CGAP (NCI)Hs.454625
Gene ExpressionGOLGA6L3 [ NCBI-GEO ]   GOLGA6L3 [ EBI - ARRAY_EXPRESS ]   GOLGA6L3 [ SEEK ]   GOLGA6L3 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA6L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100133220
GTEX Portal (Tissue expression)GOLGA6L3
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NEY3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NEY3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NEY3
Splice isoforms : SwissVarA6NEY3
PhosPhoSitePlusA6NEY3
Domains : Interpro (EBI)GOLGA6L    Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA6L3
DMDM Disease mutations100133220
Blocks (Seattle)GOLGA6L3
SuperfamilyA6NEY3
Peptide AtlasA6NEY3
IPIIPI00871321   IPI00965646   IPI00978245   IPI00975739   
Protein Interaction databases
DIP (DOE-UCLA)A6NEY3
IntAct (EBI)A6NEY3
BioGRIDGOLGA6L3
STRING (EMBL)GOLGA6L3
ZODIACGOLGA6L3
Ontologies - Pathways
QuickGOA6NEY3
Ontology : AmiGOGolgi apparatus  
Ontology : EGO-EBIGolgi apparatus  
NDEx NetworkGOLGA6L3
Atlas of Cancer Signalling NetworkGOLGA6L3
Wikipedia pathwaysGOLGA6L3
Orthology - Evolution
OrthoDB100133220
Phylogenetic Trees/Animal Genes : TreeFamGOLGA6L3
HOVERGENA6NEY3
HOGENOMA6NEY3
Homologs : HomoloGeneGOLGA6L3
Homology/Alignments : Family Browser (UCSC)GOLGA6L3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA6L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA6L3
dbVarGOLGA6L3
ClinVarGOLGA6L3
1000_GenomesGOLGA6L3 
Exome Variant ServerGOLGA6L3
ExAC (Exome Aggregation Consortium)GOLGA6L3 (select the gene name)
Genetic variants : HAPMAP100133220
Genomic Variants (DGV)GOLGA6L3 [DGVbeta]
DECIPHERGOLGA6L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA6L3 
Mutations
ICGC Data PortalGOLGA6L3 
TCGA Data PortalGOLGA6L3 
Broad Tumor PortalGOLGA6L3
OASIS PortalGOLGA6L3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGOLGA6L3
BioMutasearch GOLGA6L3
DgiDB (Drug Gene Interaction Database)GOLGA6L3
DoCM (Curated mutations)GOLGA6L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA6L3 (select a term)
intoGenGOLGA6L3
Cancer3DGOLGA6L3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA6L3
Genetic Testing Registry GOLGA6L3
NextProtA6NEY3 [Medical]
TSGene100133220
GENETestsGOLGA6L3
Target ValidationGOLGA6L3
Huge Navigator GOLGA6L3 [HugePedia]
snp3D : Map Gene to Disease100133220
BioCentury BCIQGOLGA6L3
ClinGenGOLGA6L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100133220
Chemical/Pharm GKB GenePA165478787
Clinical trialGOLGA6L3
Miscellaneous
canSAR (ICR)GOLGA6L3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA6L3
EVEXGOLGA6L3
GoPubMedGOLGA6L3
iHOPGOLGA6L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:50:56 CEST 2017

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