Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GOLGA6L4 (golgin A6 family-like 4)

Identity

Alias_namesgolgi autoantigen, golgin subfamily a, 6-like 4
Other alias-
HGNC (Hugo) -
LocusID (NCBI) 643707
Atlas_Id 63883
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 84904525 and ends at 84914120 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)GOLGA6L4  643707  golgin A6 family-like 4
Aliases
GeneCards (Weizmann)GOLGA6L4
Ensembl hg19 (Hinxton)ENSG00000184206 [Gene_View]  chr15:84904525-84914120 [Contig_View]  GOLGA6L4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000184206 [Gene_View]  chr15:84904525-84914120 [Contig_View]  GOLGA6L4 [Vega]
ICGC DataPortalENSG00000184206
TCGA cBioPortalGOLGA6L4
AceView (NCBI)GOLGA6L4
Genatlas (Paris)GOLGA6L4
WikiGenes643707
SOURCE (Princeton)GOLGA6L4
Genetics Home Reference (NIH)GOLGA6L4
Genomic and cartography
GoldenPath hg19 (UCSC)GOLGA6L4  -     chr15:84904525-84914120 +  15q25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GOLGA6L4  -     15q25.2   [Description]    (hg38-Dec_2013)
EnsemblGOLGA6L4 - 15q25.2 [CytoView hg19]  GOLGA6L4 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIGOLGA6L4 [Mapview hg19]  GOLGA6L4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI214116 AK090778 BC101294 DB040608
RefSeq transcript (Entrez)NM_001267536
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_006151 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)GOLGA6L4
Cluster EST : UnigeneHs.742301 [ NCBI ]
CGAP (NCI)Hs.742301
Alternative Splicing GalleryENSG00000184206
Gene ExpressionGOLGA6L4 [ NCBI-GEO ]   GOLGA6L4 [ EBI - ARRAY_EXPRESS ]   GOLGA6L4 [ SEEK ]   GOLGA6L4 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA6L4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643707
GTEX Portal (Tissue expression)GOLGA6L4
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NEF3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NEF3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NEF3
Splice isoforms : SwissVarA6NEF3
PhosPhoSitePlusA6NEF3
Domains : Interpro (EBI)GOLGA6L   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GOLGA6L4
DMDM Disease mutations643707
Blocks (Seattle)GOLGA6L4
SuperfamilyA6NEF3
Human Protein AtlasENSG00000184206
Peptide AtlasA6NEF3
Protein Interaction databases
DIP (DOE-UCLA)A6NEF3
IntAct (EBI)A6NEF3
FunCoupENSG00000184206
BioGRIDGOLGA6L4
STRING (EMBL)GOLGA6L4
ZODIACGOLGA6L4
Ontologies - Pathways
QuickGOA6NEF3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGOLGA6L4
Atlas of Cancer Signalling NetworkGOLGA6L4
Wikipedia pathwaysGOLGA6L4
Orthology - Evolution
OrthoDB643707
GeneTree (enSembl)ENSG00000184206
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENA6NEF3
HOGENOMA6NEF3
Homologs : HomoloGeneGOLGA6L4
Homology/Alignments : Family Browser (UCSC)GOLGA6L4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA6L4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA6L4
dbVarGOLGA6L4
ClinVarGOLGA6L4
1000_GenomesGOLGA6L4 
Exome Variant ServerGOLGA6L4
ExAC (Exome Aggregation Consortium)GOLGA6L4 (select the gene name)
Genetic variants : HAPMAP643707
Genomic Variants (DGV)GOLGA6L4 [DGVbeta]
DECIPHER (Syndromes)15:84904525-84914120  ENSG00000184206
CONAN: Copy Number AnalysisGOLGA6L4 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Mutations and Diseases : HGMD-
BioMutasearch GOLGA6L4
DgiDB (Drug Gene Interaction Database)GOLGA6L4
DoCM (Curated mutations)GOLGA6L4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA6L4 (select a term)
intoGenGOLGA6L4
Cancer3DGOLGA6L4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA6L4
Genetic Testing Registry GOLGA6L4
NextProtA6NEF3 [Medical]
TSGene643707
GENETestsGOLGA6L4
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease643707
BioCentury BCIQGOLGA6L4
ClinGenGOLGA6L4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643707
Clinical trialGOLGA6L4
Miscellaneous
canSAR (ICR)GOLGA6L4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA6L4
EVEXGOLGA6L4
GoPubMedGOLGA6L4
iHOPGOLGA6L4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:06:25 CET 2017

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