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GOLGA6L9 (golgin A6 family-like 9)

Identity

Alias_namesGOLGA6L20
golgi autoantigen, golgin subfamily a, 6-like 9
golgin A6 family-like 20
Other alias
HGNC (Hugo) GOLGA6L9
LocusID (NCBI) 440295
Atlas_Id 63887
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82430783 and ends at 82439386 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA6L9   37229
Cards
Entrez_Gene (NCBI)GOLGA6L9  440295  golgin A6 family-like 9
AliasesGOLGA6L20
GeneCards (Weizmann)GOLGA6L9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:82430783-82439386 [Contig_View]  GOLGA6L9 [Vega]
TCGA cBioPortalGOLGA6L9
AceView (NCBI)GOLGA6L9
Genatlas (Paris)GOLGA6L9
WikiGenes440295
SOURCE (Princeton)GOLGA6L9
Genetics Home Reference (NIH)GOLGA6L9
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA6L9  -     chr15:82430783-82439386 +  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA6L9  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblGOLGA6L9 - 15q25.2 [CytoView hg19]  GOLGA6L9 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIGOLGA6L9 [Mapview hg19]  GOLGA6L9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092106 AK128268 BC041854 BF671239 BY996849
RefSeq transcript (Entrez)NM_001291420 NM_198181
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_187606
Consensus coding sequences : CCDS (NCBI)GOLGA6L9
Cluster EST : UnigeneHs.498322 [ NCBI ]
CGAP (NCI)Hs.498322
Gene ExpressionGOLGA6L9 [ NCBI-GEO ]   GOLGA6L9 [ EBI - ARRAY_EXPRESS ]   GOLGA6L9 [ SEEK ]   GOLGA6L9 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA6L9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440295
GTEX Portal (Tissue expression)GOLGA6L9
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NEM1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NEM1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NEM1
Splice isoforms : SwissVarA6NEM1
PhosPhoSitePlusA6NEM1
Domains : Interpro (EBI)GOLGA6L    Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA6L9
DMDM Disease mutations440295
Blocks (Seattle)GOLGA6L9
SuperfamilyA6NEM1
Peptide AtlasA6NEM1
HPRD11262
IPIIPI00787094   
Protein Interaction databases
DIP (DOE-UCLA)A6NEM1
IntAct (EBI)A6NEM1
BioGRIDGOLGA6L9
STRING (EMBL)GOLGA6L9
ZODIACGOLGA6L9
Ontologies - Pathways
QuickGOA6NEM1
Ontology : AmiGOGolgi apparatus  
Ontology : EGO-EBIGolgi apparatus  
NDEx NetworkGOLGA6L9
Atlas of Cancer Signalling NetworkGOLGA6L9
Wikipedia pathwaysGOLGA6L9
Orthology - Evolution
OrthoDB440295
Phylogenetic Trees/Animal Genes : TreeFamGOLGA6L9
HOVERGENA6NEM1
HOGENOMA6NEM1
Homologs : HomoloGeneGOLGA6L9
Homology/Alignments : Family Browser (UCSC)GOLGA6L9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA6L9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA6L9
dbVarGOLGA6L9
ClinVarGOLGA6L9
1000_GenomesGOLGA6L9 
Exome Variant ServerGOLGA6L9
ExAC (Exome Aggregation Consortium)GOLGA6L9 (select the gene name)
Genetic variants : HAPMAP440295
Genomic Variants (DGV)GOLGA6L9 [DGVbeta]
DECIPHERGOLGA6L9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA6L9 
Mutations
ICGC Data PortalGOLGA6L9 
TCGA Data PortalGOLGA6L9 
Broad Tumor PortalGOLGA6L9
OASIS PortalGOLGA6L9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGOLGA6L9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA6L9
DgiDB (Drug Gene Interaction Database)GOLGA6L9
DoCM (Curated mutations)GOLGA6L9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA6L9 (select a term)
intoGenGOLGA6L9
Cancer3DGOLGA6L9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA6L9
Genetic Testing Registry GOLGA6L9
NextProtA6NEM1 [Medical]
TSGene440295
GENETestsGOLGA6L9
Target ValidationGOLGA6L9
Huge Navigator GOLGA6L9 [HugePedia]
snp3D : Map Gene to Disease440295
BioCentury BCIQGOLGA6L9
ClinGenGOLGA6L9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440295
Chemical/Pharm GKB GenePA165478891
Clinical trialGOLGA6L9
Miscellaneous
canSAR (ICR)GOLGA6L9 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA6L9
EVEXGOLGA6L9
GoPubMedGOLGA6L9
iHOPGOLGA6L9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:35 CEST 2017

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