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GOLGA7 (golgin A7)

Identity

Alias_namesgolgi autoantigen, golgin subfamily a, 7
Alias_symbol (synonym)GCP16
HSPC041
GOLGA3AP1
GOLGA7A
Other alias
HGNC (Hugo) GOLGA7
LocusID (NCBI) 51125
Atlas_Id 63888
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 41490654 and ends at 41510980 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GOLGA7 (8p11.21) / FYTTD1 (3q29)RNF170 (8p11.21) / GOLGA7 (8p11.21)SSH2 (17q11.2) / GOLGA7 (8p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA7   24876
Cards
Entrez_Gene (NCBI)GOLGA7  51125  golgin A7
AliasesGCP16; GOLGA3AP1; GOLGA7A; HSPC041
GeneCards (Weizmann)GOLGA7
Ensembl hg19 (Hinxton)ENSG00000147533 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147533 [Gene_View]  chr8:41490654-41510980 [Contig_View]  GOLGA7 [Vega]
ICGC DataPortalENSG00000147533
TCGA cBioPortalGOLGA7
AceView (NCBI)GOLGA7
Genatlas (Paris)GOLGA7
WikiGenes51125
SOURCE (Princeton)GOLGA7
Genetics Home Reference (NIH)GOLGA7
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA7  -     chr8:41490654-41510980 +  8p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA7  -     8p11.21   [Description]    (hg19-Feb_2009)
EnsemblGOLGA7 - 8p11.21 [CytoView hg19]  GOLGA7 - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBIGOLGA7 [Mapview hg19]  GOLGA7 [Mapview hg38]
OMIM609453   
Gene and transcription
Genbank (Entrez)AB104615 AF068291 AF125102 AK026613 AL695304
RefSeq transcript (Entrez)NM_001002296 NM_001174124 NM_016099
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA7
Cluster EST : UnigeneHs.654773 [ NCBI ]
CGAP (NCI)Hs.654773
Alternative Splicing GalleryENSG00000147533
Gene ExpressionGOLGA7 [ NCBI-GEO ]   GOLGA7 [ EBI - ARRAY_EXPRESS ]   GOLGA7 [ SEEK ]   GOLGA7 [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51125
GTEX Portal (Tissue expression)GOLGA7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5G4
Splice isoforms : SwissVarQ7Z5G4
PhosPhoSitePlusQ7Z5G4
Domains : Interpro (EBI)Golgin_A_7/ERF4   
Domain families : Pfam (Sanger)Erf4 (PF10256)   
Domain families : Pfam (NCBI)pfam10256   
Conserved Domain (NCBI)GOLGA7
DMDM Disease mutations51125
Blocks (Seattle)GOLGA7
SuperfamilyQ7Z5G4
Human Protein AtlasENSG00000147533
Peptide AtlasQ7Z5G4
HPRD13595
IPIIPI00480022   IPI00956685   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5G4
IntAct (EBI)Q7Z5G4
FunCoupENSG00000147533
BioGRIDGOLGA7
STRING (EMBL)GOLGA7
ZODIACGOLGA7
Ontologies - Pathways
QuickGOQ7Z5G4
Ontology : AmiGOpalmitoyltransferase complex  protein binding  extracellular region  Golgi stack  protein targeting to membrane  peptidyl-L-cysteine S-palmitoylation  protein-cysteine S-palmitoyltransferase activity  intrinsic component of Golgi membrane  Golgi to plasma membrane protein transport  neutrophil degranulation  protein stabilization  extracellular exosome  tertiary granule lumen  
Ontology : EGO-EBIpalmitoyltransferase complex  protein binding  extracellular region  Golgi stack  protein targeting to membrane  peptidyl-L-cysteine S-palmitoylation  protein-cysteine S-palmitoyltransferase activity  intrinsic component of Golgi membrane  Golgi to plasma membrane protein transport  neutrophil degranulation  protein stabilization  extracellular exosome  tertiary granule lumen  
NDEx NetworkGOLGA7
Atlas of Cancer Signalling NetworkGOLGA7
Wikipedia pathwaysGOLGA7
Orthology - Evolution
OrthoDB51125
GeneTree (enSembl)ENSG00000147533
Phylogenetic Trees/Animal Genes : TreeFamGOLGA7
HOVERGENQ7Z5G4
HOGENOMQ7Z5G4
Homologs : HomoloGeneGOLGA7
Homology/Alignments : Family Browser (UCSC)GOLGA7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA7
dbVarGOLGA7
ClinVarGOLGA7
1000_GenomesGOLGA7 
Exome Variant ServerGOLGA7
ExAC (Exome Aggregation Consortium)GOLGA7 (select the gene name)
Genetic variants : HAPMAP51125
Genomic Variants (DGV)GOLGA7 [DGVbeta]
DECIPHERGOLGA7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA7 
Mutations
ICGC Data PortalGOLGA7 
TCGA Data PortalGOLGA7 
Broad Tumor PortalGOLGA7
OASIS PortalGOLGA7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA7
DgiDB (Drug Gene Interaction Database)GOLGA7
DoCM (Curated mutations)GOLGA7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA7 (select a term)
intoGenGOLGA7
Cancer3DGOLGA7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609453   
Orphanet
MedgenGOLGA7
Genetic Testing Registry GOLGA7
NextProtQ7Z5G4 [Medical]
TSGene51125
GENETestsGOLGA7
Target ValidationGOLGA7
Huge Navigator GOLGA7 [HugePedia]
snp3D : Map Gene to Disease51125
BioCentury BCIQGOLGA7
ClinGenGOLGA7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51125
Chemical/Pharm GKB GenePA134991547
Clinical trialGOLGA7
Miscellaneous
canSAR (ICR)GOLGA7 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA7
EVEXGOLGA7
GoPubMedGOLGA7
iHOPGOLGA7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:57 CEST 2017

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