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GOLGA8B (golgin A8 family member B)

Identity

Alias_namesgolgi autoantigen, golgin subfamily a, 8B
golgin A8 family, member B
Other aliasGOLGA5
HGNC (Hugo) GOLGA8B
LocusID (NCBI) 440270
Atlas_Id 63891
Location 15q14  [Link to chromosome band 15q14]
Location_base_pair Starts at 34525283 and ends at 34536021 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MFSD2A (1p34.2) / GOLGA8B (15q14)UBE2Q2 (15q24.2) / GOLGA8B (15q14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA8B   31973
Cards
Entrez_Gene (NCBI)GOLGA8B  440270  golgin A8 family member B
AliasesGOLGA5
GeneCards (Weizmann)GOLGA8B
Ensembl hg19 (Hinxton)ENSG00000215252 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215252 [Gene_View]  chr15:34525283-34536021 [Contig_View]  GOLGA8B [Vega]
ICGC DataPortalENSG00000215252
TCGA cBioPortalGOLGA8B
AceView (NCBI)GOLGA8B
Genatlas (Paris)GOLGA8B
WikiGenes440270
SOURCE (Princeton)GOLGA8B
Genetics Home Reference (NIH)GOLGA8B
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA8B  -     chr15:34525283-34536021 -  15q14   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA8B  -     15q14   [Description]    (hg19-Feb_2009)
EnsemblGOLGA8B - 15q14 [CytoView hg19]  GOLGA8B - 15q14 [CytoView hg38]
Mapping of homologs : NCBIGOLGA8B [Mapview hg19]  GOLGA8B [Mapview hg38]
OMIM609619   
Gene and transcription
Genbank (Entrez)AK097551 AL133593 BC143254 BC144610 BX647673
RefSeq transcript (Entrez)NM_001023567
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA8B
Cluster EST : UnigeneHs.720151 [ NCBI ]
CGAP (NCI)Hs.720151
Alternative Splicing GalleryENSG00000215252
Gene ExpressionGOLGA8B [ NCBI-GEO ]   GOLGA8B [ EBI - ARRAY_EXPRESS ]   GOLGA8B [ SEEK ]   GOLGA8B [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA8B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440270
GTEX Portal (Tissue expression)GOLGA8B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MQT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MQT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MQT2
Splice isoforms : SwissVarA8MQT2
PhosPhoSitePlusA8MQT2
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA8B
DMDM Disease mutations440270
Blocks (Seattle)GOLGA8B
SuperfamilyA8MQT2
Human Protein AtlasENSG00000215252
Peptide AtlasA8MQT2
HPRD18635
IPIIPI00472363   IPI00793327   IPI00980673   IPI00872693   IPI01012379   
Protein Interaction databases
DIP (DOE-UCLA)A8MQT2
IntAct (EBI)A8MQT2
FunCoupENSG00000215252
BioGRIDGOLGA8B
STRING (EMBL)GOLGA8B
ZODIACGOLGA8B
Ontologies - Pathways
QuickGOA8MQT2
Ontology : AmiGOGolgi apparatus  cytosol  Golgi cisterna membrane  
Ontology : EGO-EBIGolgi apparatus  cytosol  Golgi cisterna membrane  
NDEx NetworkGOLGA8B
Atlas of Cancer Signalling NetworkGOLGA8B
Wikipedia pathwaysGOLGA8B
Orthology - Evolution
OrthoDB440270
GeneTree (enSembl)ENSG00000215252
Phylogenetic Trees/Animal Genes : TreeFamGOLGA8B
HOVERGENA8MQT2
HOGENOMA8MQT2
Homologs : HomoloGeneGOLGA8B
Homology/Alignments : Family Browser (UCSC)GOLGA8B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA8B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA8B
dbVarGOLGA8B
ClinVarGOLGA8B
1000_GenomesGOLGA8B 
Exome Variant ServerGOLGA8B
ExAC (Exome Aggregation Consortium)GOLGA8B (select the gene name)
Genetic variants : HAPMAP440270
Genomic Variants (DGV)GOLGA8B [DGVbeta]
DECIPHERGOLGA8B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA8B 
Mutations
ICGC Data PortalGOLGA8B 
TCGA Data PortalGOLGA8B 
Broad Tumor PortalGOLGA8B
OASIS PortalGOLGA8B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA8B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA8B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA8B
DgiDB (Drug Gene Interaction Database)GOLGA8B
DoCM (Curated mutations)GOLGA8B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA8B (select a term)
intoGenGOLGA8B
Cancer3DGOLGA8B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609619   
Orphanet
MedgenGOLGA8B
Genetic Testing Registry GOLGA8B
NextProtA8MQT2 [Medical]
TSGene440270
GENETestsGOLGA8B
Target ValidationGOLGA8B
Huge Navigator GOLGA8B [HugePedia]
snp3D : Map Gene to Disease440270
BioCentury BCIQGOLGA8B
ClinGenGOLGA8B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440270
Chemical/Pharm GKB GenePA142671717
Clinical trialGOLGA8B
Miscellaneous
canSAR (ICR)GOLGA8B (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA8B
EVEXGOLGA8B
GoPubMedGOLGA8B
iHOPGOLGA8B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:36 CEST 2017

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