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GOLGA8DP (golgin A8 family member D, pseudogene)

Identity

Alias_namesGOLGA8D
golgi autoantigen, golgin subfamily a, 8D
golgin A8 family, member D, pseudogene
Other alias
HGNC (Hugo) GOLGA8DP
LocusID (NCBI) 100132979
Atlas_Id 63893
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 23157340 and ends at 23170783 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA8DP   32376
Cards
Entrez_Gene (NCBI)GOLGA8DP  100132979  golgin A8 family member D, pseudogene
AliasesGOLGA8D
GeneCards (Weizmann)GOLGA8DP
Ensembl hg19 (Hinxton)ENSG00000175676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175676 [Gene_View]  chr15:23157340-23170783 [Contig_View]  GOLGA8DP [Vega]
ICGC DataPortalENSG00000175676
TCGA cBioPortalGOLGA8DP
AceView (NCBI)GOLGA8DP
Genatlas (Paris)GOLGA8DP
WikiGenes100132979
SOURCE (Princeton)GOLGA8DP
Genetics Home Reference (NIH)GOLGA8DP
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA8DP  -     chr15:23157340-23170783 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA8DP  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblGOLGA8DP - 15q11.2 [CytoView hg19]  GOLGA8DP - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBIGOLGA8DP [Mapview hg19]  GOLGA8DP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292534 BC110417 DQ599035
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_187603 NT_187659
Consensus coding sequences : CCDS (NCBI)GOLGA8DP
Cluster EST : UnigeneHs.592025 [ NCBI ]
CGAP (NCI)Hs.592025
Alternative Splicing GalleryENSG00000175676
Gene ExpressionGOLGA8DP [ NCBI-GEO ]   GOLGA8DP [ EBI - ARRAY_EXPRESS ]   GOLGA8DP [ SEEK ]   GOLGA8DP [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA8DP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132979
GTEX Portal (Tissue expression)GOLGA8DP
Human Protein AtlasENSG00000175676-GOLGA8DP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0D2H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0D2H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0D2H9
Splice isoforms : SwissVarQ0D2H9
PhosPhoSitePlusQ0D2H9
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA8DP
DMDM Disease mutations100132979
Blocks (Seattle)GOLGA8DP
SuperfamilyQ0D2H9
Human Protein Atlas [tissue]ENSG00000175676-GOLGA8DP [tissue]
Peptide AtlasQ0D2H9
IPIIPI00886962   IPI00942708   IPI00973729   
Protein Interaction databases
DIP (DOE-UCLA)Q0D2H9
IntAct (EBI)Q0D2H9
FunCoupENSG00000175676
BioGRIDGOLGA8DP
STRING (EMBL)GOLGA8DP
ZODIACGOLGA8DP
Ontologies - Pathways
QuickGOQ0D2H9
Ontology : AmiGOprotein binding  Golgi apparatus  
Ontology : EGO-EBIprotein binding  Golgi apparatus  
NDEx NetworkGOLGA8DP
Atlas of Cancer Signalling NetworkGOLGA8DP
Wikipedia pathwaysGOLGA8DP
Orthology - Evolution
OrthoDB100132979
GeneTree (enSembl)ENSG00000175676
Phylogenetic Trees/Animal Genes : TreeFamGOLGA8DP
HOVERGENQ0D2H9
HOGENOMQ0D2H9
Homologs : HomoloGeneGOLGA8DP
Homology/Alignments : Family Browser (UCSC)GOLGA8DP
Gene fusions - Rearrangements
Tumor Fusion PortalGOLGA8DP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA8DP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA8DP
dbVarGOLGA8DP
ClinVarGOLGA8DP
1000_GenomesGOLGA8DP 
Exome Variant ServerGOLGA8DP
ExAC (Exome Aggregation Consortium)ENSG00000175676
GNOMAD BrowserENSG00000175676
Genetic variants : HAPMAP100132979
Genomic Variants (DGV)GOLGA8DP [DGVbeta]
DECIPHERGOLGA8DP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA8DP 
Mutations
ICGC Data PortalGOLGA8DP 
TCGA Data PortalGOLGA8DP 
Broad Tumor PortalGOLGA8DP
OASIS PortalGOLGA8DP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGOLGA8DP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA8DP
DgiDB (Drug Gene Interaction Database)GOLGA8DP
DoCM (Curated mutations)GOLGA8DP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA8DP (select a term)
intoGenGOLGA8DP
Cancer3DGOLGA8DP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGOLGA8DP
MedgenGOLGA8DP
Genetic Testing Registry GOLGA8DP
NextProtQ0D2H9 [Medical]
TSGene100132979
GENETestsGOLGA8DP
Target ValidationGOLGA8DP
Huge Navigator GOLGA8DP [HugePedia]
snp3D : Map Gene to Disease100132979
BioCentury BCIQGOLGA8DP
ClinGenGOLGA8DP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100132979
Chemical/Pharm GKB GenePA142671719
Clinical trialGOLGA8DP
Miscellaneous
canSAR (ICR)GOLGA8DP (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA8DP
EVEXGOLGA8DP
GoPubMedGOLGA8DP
iHOPGOLGA8DP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:31:32 CET 2017

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