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GOLGA8IP (golgin A8 family member I, pseudogene)

Identity

Alias_namesGOLGA9P
GOLGA8I
golgi autoantigen, golgin subfamily a, 9 pseudogene
golgin A9, pseudogene
golgin A8 family, member I
golgin A8 family, member I, pseudogene
Alias_symbol (synonym)FLJ35785
Other alias
HGNC (Hugo) GOLGA8IP
LocusID (NCBI) 283796
Atlas_Id 63898
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 22610353 and ends at 22617854 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA8IP   26660
Cards
Entrez_Gene (NCBI)GOLGA8IP  283796  golgin A8 family member I, pseudogene
AliasesGOLGA8I; GOLGA9P
GeneCards (Weizmann)GOLGA8IP
Ensembl hg19 (Hinxton)ENSG00000277561 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277561 [Gene_View]  chr15:22610353-22617854 [Contig_View]  GOLGA8IP [Vega]
ICGC DataPortalENSG00000277561
TCGA cBioPortalGOLGA8IP
AceView (NCBI)GOLGA8IP
Genatlas (Paris)GOLGA8IP
WikiGenes283796
SOURCE (Princeton)GOLGA8IP
Genetics Home Reference (NIH)GOLGA8IP
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA8IP  -     chr15:22610353-22617854 -  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA8IP  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblGOLGA8IP - 15q11.2 [CytoView hg19]  GOLGA8IP - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBIGOLGA8IP [Mapview hg19]  GOLGA8IP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093104
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_187604
Consensus coding sequences : CCDS (NCBI)GOLGA8IP
Cluster EST : UnigeneHs.375441 [ NCBI ]
CGAP (NCI)Hs.375441
Alternative Splicing GalleryENSG00000277561
Gene ExpressionGOLGA8IP [ NCBI-GEO ]   GOLGA8IP [ EBI - ARRAY_EXPRESS ]   GOLGA8IP [ SEEK ]   GOLGA8IP [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA8IP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283796
GTEX Portal (Tissue expression)GOLGA8IP
Human Protein AtlasENSG00000277561-GOLGA8IP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NC78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NC78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NC78
Splice isoforms : SwissVarA6NC78
PhosPhoSitePlusA6NC78
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA8IP
DMDM Disease mutations283796
Blocks (Seattle)GOLGA8IP
SuperfamilyA6NC78
Human Protein Atlas [tissue]ENSG00000277561-GOLGA8IP [tissue]
Peptide AtlasA6NC78
HPRD08189
IPIIPI00798221   
Protein Interaction databases
DIP (DOE-UCLA)A6NC78
IntAct (EBI)A6NC78
FunCoupENSG00000277561
BioGRIDGOLGA8IP
STRING (EMBL)GOLGA8IP
ZODIACGOLGA8IP
Ontologies - Pathways
QuickGOA6NC78
Ontology : AmiGOGolgi cisterna membrane  
Ontology : EGO-EBIGolgi cisterna membrane  
NDEx NetworkGOLGA8IP
Atlas of Cancer Signalling NetworkGOLGA8IP
Wikipedia pathwaysGOLGA8IP
Orthology - Evolution
OrthoDB283796
GeneTree (enSembl)ENSG00000277561
Phylogenetic Trees/Animal Genes : TreeFamGOLGA8IP
HOVERGENA6NC78
HOGENOMA6NC78
Homologs : HomoloGeneGOLGA8IP
Homology/Alignments : Family Browser (UCSC)GOLGA8IP
Gene fusions - Rearrangements
Fusion: Tumor Portal GOLGA8IP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA8IP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA8IP
dbVarGOLGA8IP
ClinVarGOLGA8IP
1000_GenomesGOLGA8IP 
Exome Variant ServerGOLGA8IP
ExAC (Exome Aggregation Consortium)ENSG00000277561
GNOMAD BrowserENSG00000277561
Genetic variants : HAPMAP283796
Genomic Variants (DGV)GOLGA8IP [DGVbeta]
DECIPHERGOLGA8IP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA8IP 
Mutations
ICGC Data PortalGOLGA8IP 
TCGA Data PortalGOLGA8IP 
Broad Tumor PortalGOLGA8IP
OASIS PortalGOLGA8IP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGOLGA8IP
BioMutasearch GOLGA8IP
DgiDB (Drug Gene Interaction Database)GOLGA8IP
DoCM (Curated mutations)GOLGA8IP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA8IP (select a term)
intoGenGOLGA8IP
Cancer3DGOLGA8IP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA8IP
Genetic Testing Registry GOLGA8IP
NextProtA6NC78 [Medical]
TSGene283796
GENETestsGOLGA8IP
Target ValidationGOLGA8IP
Huge Navigator GOLGA8IP [HugePedia]
snp3D : Map Gene to Disease283796
BioCentury BCIQGOLGA8IP
ClinGenGOLGA8IP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283796
Clinical trialGOLGA8IP
Miscellaneous
canSAR (ICR)GOLGA8IP (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA8IP
EVEXGOLGA8IP
GoPubMedGOLGA8IP
iHOPGOLGA8IP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:49:21 CET 2017

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