Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GOLGA8K (golgin A8 family member K)

Identity

Alias_namesgolgin A8 family, member K
Other alias-
HGNC (Hugo) GOLGA8K
LocusID (NCBI) 653125
Atlas_Id 63900
Location 15q13.3  [Link to chromosome band 15q13]
Location_base_pair Starts at 32389585 and ends at 32403292 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA8K   38652
Cards
Entrez_Gene (NCBI)GOLGA8K  653125  golgin A8 family member K
Aliases
GeneCards (Weizmann)GOLGA8K
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:32389585-32403292 [Contig_View]  GOLGA8K [Vega]
TCGA cBioPortalGOLGA8K
AceView (NCBI)GOLGA8K
Genatlas (Paris)GOLGA8K
WikiGenes653125
SOURCE (Princeton)GOLGA8K
Genetics Home Reference (NIH)GOLGA8K
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA8K  -     chr15:32389585-32403292 -  15q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA8K  -     15q13.3   [Description]    (hg19-Feb_2009)
EnsemblGOLGA8K - 15q13.3 [CytoView hg19]  GOLGA8K - 15q13.3 [CytoView hg38]
Mapping of homologs : NCBIGOLGA8K [Mapview hg19]  GOLGA8K [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001282493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA8K
Gene ExpressionGOLGA8K [ NCBI-GEO ]   GOLGA8K [ EBI - ARRAY_EXPRESS ]   GOLGA8K [ SEEK ]   GOLGA8K [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA8K [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653125
GTEX Portal (Tissue expression)GOLGA8K
Protein : pattern, domain, 3D structure
UniProt/SwissProtD6RF30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtD6RF30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProD6RF30
Splice isoforms : SwissVarD6RF30
PhosPhoSitePlusD6RF30
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA8K
DMDM Disease mutations653125
Blocks (Seattle)GOLGA8K
SuperfamilyD6RF30
Peptide AtlasD6RF30
IPIIPI01014736   IPI00964392   IPI00887075   
Protein Interaction databases
DIP (DOE-UCLA)D6RF30
IntAct (EBI)D6RF30
BioGRIDGOLGA8K
STRING (EMBL)GOLGA8K
ZODIACGOLGA8K
Ontologies - Pathways
QuickGOD6RF30
Ontology : AmiGOGolgi apparatus  
Ontology : EGO-EBIGolgi apparatus  
NDEx NetworkGOLGA8K
Atlas of Cancer Signalling NetworkGOLGA8K
Wikipedia pathwaysGOLGA8K
Orthology - Evolution
OrthoDB653125
Phylogenetic Trees/Animal Genes : TreeFamGOLGA8K
HOVERGEND6RF30
HOGENOMD6RF30
Homologs : HomoloGeneGOLGA8K
Homology/Alignments : Family Browser (UCSC)GOLGA8K
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA8K [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA8K
dbVarGOLGA8K
ClinVarGOLGA8K
1000_GenomesGOLGA8K 
Exome Variant ServerGOLGA8K
ExAC (Exome Aggregation Consortium)GOLGA8K (select the gene name)
Genetic variants : HAPMAP653125
Genomic Variants (DGV)GOLGA8K [DGVbeta]
DECIPHERGOLGA8K [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA8K 
Mutations
ICGC Data PortalGOLGA8K 
TCGA Data PortalGOLGA8K 
Broad Tumor PortalGOLGA8K
OASIS PortalGOLGA8K [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGOLGA8K
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA8K
DgiDB (Drug Gene Interaction Database)GOLGA8K
DoCM (Curated mutations)GOLGA8K (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA8K (select a term)
intoGenGOLGA8K
Cancer3DGOLGA8K(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA8K
Genetic Testing Registry GOLGA8K
NextProtD6RF30 [Medical]
TSGene653125
GENETestsGOLGA8K
Target ValidationGOLGA8K
Huge Navigator GOLGA8K [HugePedia]
snp3D : Map Gene to Disease653125
BioCentury BCIQGOLGA8K
ClinGenGOLGA8K
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653125
Chemical/Pharm GKB GenePA166049033
Clinical trialGOLGA8K
Miscellaneous
canSAR (ICR)GOLGA8K (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA8K
EVEXGOLGA8K
GoPubMedGOLGA8K
iHOPGOLGA8K
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:51:00 CEST 2017

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