Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GOLGA8O (golgin A8 family member O)

Identity

Alias_namesgolgin A8 family, member O
Other alias-
HGNC (Hugo) GOLGA8O
LocusID (NCBI) 728047
Atlas_Id 63903
Location 15q13.3  [Link to chromosome band 15q13]
Location_base_pair Starts at 32441914 and ends at 32455634 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA8O   44406
Cards
Entrez_Gene (NCBI)GOLGA8O  728047  golgin A8 family member O
Aliases
GeneCards (Weizmann)GOLGA8O
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:32441914-32455634 [Contig_View]  GOLGA8O [Vega]
TCGA cBioPortalGOLGA8O
AceView (NCBI)GOLGA8O
Genatlas (Paris)GOLGA8O
WikiGenes728047
SOURCE (Princeton)GOLGA8O
Genetics Home Reference (NIH)GOLGA8O
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA8O  -     chr15:32441914-32455634 -  15q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA8O  -     15q13.3   [Description]    (hg19-Feb_2009)
EnsemblGOLGA8O - 15q13.3 [CytoView hg19]  GOLGA8O - 15q13.3 [CytoView hg38]
Mapping of homologs : NCBIGOLGA8O [Mapview hg19]  GOLGA8O [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ477899 DB068178
RefSeq transcript (Entrez)NM_001277308
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLGA8O
Cluster EST : UnigeneHs.672754 [ NCBI ]
CGAP (NCI)Hs.672754
Gene ExpressionGOLGA8O [ NCBI-GEO ]   GOLGA8O [ EBI - ARRAY_EXPRESS ]   GOLGA8O [ SEEK ]   GOLGA8O [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA8O [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728047
GTEX Portal (Tissue expression)GOLGA8O
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NCC3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NCC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NCC3
Splice isoforms : SwissVarA6NCC3
PhosPhoSitePlusA6NCC3
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA8O
DMDM Disease mutations728047
Blocks (Seattle)GOLGA8O
SuperfamilyA6NCC3
Peptide AtlasA6NCC3
IPIIPI00479557   IPI00786988   IPI00982728   IPI00966593   
Protein Interaction databases
DIP (DOE-UCLA)A6NCC3
IntAct (EBI)A6NCC3
BioGRIDGOLGA8O
STRING (EMBL)GOLGA8O
ZODIACGOLGA8O
Ontologies - Pathways
QuickGOA6NCC3
Ontology : AmiGOprotein binding  Golgi apparatus  
Ontology : EGO-EBIprotein binding  Golgi apparatus  
NDEx NetworkGOLGA8O
Atlas of Cancer Signalling NetworkGOLGA8O
Wikipedia pathwaysGOLGA8O
Orthology - Evolution
OrthoDB728047
Phylogenetic Trees/Animal Genes : TreeFamGOLGA8O
HOVERGENA6NCC3
HOGENOMA6NCC3
Homologs : HomoloGeneGOLGA8O
Homology/Alignments : Family Browser (UCSC)GOLGA8O
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA8O [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA8O
dbVarGOLGA8O
ClinVarGOLGA8O
1000_GenomesGOLGA8O 
Exome Variant ServerGOLGA8O
ExAC (Exome Aggregation Consortium)GOLGA8O (select the gene name)
Genetic variants : HAPMAP728047
Genomic Variants (DGV)GOLGA8O [DGVbeta]
DECIPHERGOLGA8O [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA8O 
Mutations
ICGC Data PortalGOLGA8O 
TCGA Data PortalGOLGA8O 
Broad Tumor PortalGOLGA8O
OASIS PortalGOLGA8O [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA8O  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLGA8O
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA8O
DgiDB (Drug Gene Interaction Database)GOLGA8O
DoCM (Curated mutations)GOLGA8O (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA8O (select a term)
intoGenGOLGA8O
Cancer3DGOLGA8O(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLGA8O
Genetic Testing Registry GOLGA8O
NextProtA6NCC3 [Medical]
TSGene728047
GENETestsGOLGA8O
Target ValidationGOLGA8O
Huge Navigator GOLGA8O [HugePedia]
snp3D : Map Gene to Disease728047
BioCentury BCIQGOLGA8O
ClinGenGOLGA8O
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728047
Chemical/Pharm GKB GenePA166049126
Clinical trialGOLGA8O
Miscellaneous
canSAR (ICR)GOLGA8O (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA8O
EVEXGOLGA8O
GoPubMedGOLGA8O
iHOPGOLGA8O
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:51:01 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.