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GOLGA8R (golgin A8 family member R)

Identity

Alias (NCBI)-
HGNC (Hugo) GOLGA8R
HGNC Previous namegolgin A8 family, member R
LocusID (NCBI) 101059918
Atlas_Id 63904
Location 15q13.2  [Link to chromosome band 15q13]
Location_base_pair Starts at 30400562 and ends at 30414260 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLGA8R   44407
Cards
Entrez_Gene (NCBI)GOLGA8R  101059918  golgin A8 family member R
Aliases
GeneCards (Weizmann)GOLGA8R
Ensembl hg19 (Hinxton)ENSG00000186399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186399 [Gene_View]  ENSG00000186399 [Sequence]  chr15:30400562-30414260 [Contig_View]  GOLGA8R [Vega]
ICGC DataPortalENSG00000186399
TCGA cBioPortalGOLGA8R
AceView (NCBI)GOLGA8R
Genatlas (Paris)GOLGA8R
WikiGenes101059918
SOURCE (Princeton)GOLGA8R
Genetics Home Reference (NIH)GOLGA8R
Genomic and cartography
GoldenPath hg38 (UCSC)GOLGA8R  -     chr15:30400562-30414260 -  15q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLGA8R  -     15q13.2   [Description]    (hg19-Feb_2009)
GoldenPathGOLGA8R - 15q13.2 [CytoView hg19]  GOLGA8R - 15q13.2 [CytoView hg38]
ImmunoBaseENSG00000186399
genome Data Viewer NCBIGOLGA8R [Mapview hg19]  
Gene and transcription
Genbank (Entrez)HY031636
RefSeq transcript (Entrez)NM_001282484
RefSeq genomic (Entrez)NC_000015 NT_187660 NW_011332701
Consensus coding sequences : CCDS (NCBI)GOLGA8R
Alternative Splicing GalleryENSG00000186399
Gene ExpressionGOLGA8R [ NCBI-GEO ]   GOLGA8R [ EBI - ARRAY_EXPRESS ]   GOLGA8R [ SEEK ]   GOLGA8R [ MEM ]
Gene Expression Viewer (FireBrowse)GOLGA8R [ Firebrowse - Broad ]
GenevisibleExpression of GOLGA8R in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101059918
GTEX Portal (Tissue expression)GOLGA8R
Human Protein AtlasENSG00000186399-GOLGA8R [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtI6L899   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtI6L899  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProI6L899
Splice isoforms : SwissVarI6L899
PhosPhoSitePlusI6L899
Domains : Interpro (EBI)Golgin_A   
Domain families : Pfam (Sanger)GOLGA2L5 (PF15070)   
Domain families : Pfam (NCBI)pfam15070   
Conserved Domain (NCBI)GOLGA8R
DMDM Disease mutations101059918
Blocks (Seattle)GOLGA8R
SuperfamilyI6L899
Human Protein Atlas [tissue]ENSG00000186399-GOLGA8R [tissue]
Peptide AtlasI6L899
Protein Interaction databases
DIP (DOE-UCLA)I6L899
IntAct (EBI)I6L899
FunCoupENSG00000186399
BioGRIDGOLGA8R
STRING (EMBL)GOLGA8R
ZODIACGOLGA8R
Ontologies - Pathways
QuickGOI6L899
Ontology : AmiGOGolgi cis cisterna  Golgi apparatus  cis-Golgi network  Golgi organization  Golgi cisterna membrane  spindle assembly  
Ontology : EGO-EBIGolgi cis cisterna  Golgi apparatus  cis-Golgi network  Golgi organization  Golgi cisterna membrane  spindle assembly  
NDEx NetworkGOLGA8R
Atlas of Cancer Signalling NetworkGOLGA8R
Wikipedia pathwaysGOLGA8R
Orthology - Evolution
OrthoDB101059918
GeneTree (enSembl)ENSG00000186399
Phylogenetic Trees/Animal Genes : TreeFamGOLGA8R
HOGENOMI6L899
Homologs : HomoloGeneGOLGA8R
Homology/Alignments : Family Browser (UCSC)GOLGA8R
Gene fusions - Rearrangements
Fusion : QuiverGOLGA8R
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLGA8R [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLGA8R
dbVarGOLGA8R
ClinVarGOLGA8R
1000_GenomesGOLGA8R 
Exome Variant ServerGOLGA8R
GNOMAD BrowserENSG00000186399
Varsome BrowserGOLGA8R
Genetic variants : HAPMAP101059918
Genomic Variants (DGV)GOLGA8R [DGVbeta]
DECIPHERGOLGA8R [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLGA8R 
Mutations
ICGC Data PortalGOLGA8R 
TCGA Data PortalGOLGA8R 
Broad Tumor PortalGOLGA8R
OASIS PortalGOLGA8R [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLGA8R  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGOLGA8R
Mutations and Diseases : HGMDGOLGA8R
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLGA8R
DgiDB (Drug Gene Interaction Database)GOLGA8R
DoCM (Curated mutations)GOLGA8R (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLGA8R (select a term)
intoGenGOLGA8R
Cancer3DGOLGA8R(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGOLGA8R
MedgenGOLGA8R
Genetic Testing Registry GOLGA8R
NextProtI6L899 [Medical]
TSGene101059918
GENETestsGOLGA8R
Target ValidationGOLGA8R
Huge Navigator GOLGA8R [HugePedia]
snp3D : Map Gene to Disease101059918
BioCentury BCIQGOLGA8R
ClinGenGOLGA8R
Clinical trials, drugs, therapy
Protein Interactions : CTD101059918
Pharm GKB GenePA166049127
Clinical trialGOLGA8R
Miscellaneous
canSAR (ICR)GOLGA8R (select the gene name)
HarmonizomeGOLGA8R
DataMed IndexGOLGA8R
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLGA8R
EVEXGOLGA8R
GoPubMedGOLGA8R
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:12:52 CEST 2020

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