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GOLPH3L (golgi phosphoprotein 3 like)

Identity

Alias (NCBI)GPP34R
HGNC (Hugo) GOLPH3L
HGNC Alias symbGPP34R
HGNC Previous namegolgi phosphoprotein 3-like
LocusID (NCBI) 55204
Atlas_Id 54337
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 150646230 and ends at 150697154 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ANP32E (1q21.2)::GOLPH3L (1q21.3)BCAS3 (17q23.2)::GOLPH3L (1q21.3)BCR (22q11.23)::GOLPH3L (1q21.3)
CCP110 (16p12.3)::GOLPH3L (1q21.3)GOLPH3L (1q21.3)::AKT3 (1q43)GOLPH3L (1q21.3)::CTSS (1q21.3)
GOLPH3L (1q21.3)::HACD3 (15q22.31)GOLPH3L (1q21.3)::HORMAD1 (1q21.3)RPRD2 (1q21.3)::GOLPH3L (1q21.3)
GOLPH3L 1q21.3::HORMAD1 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GOLPH3L   24882
Cards
Entrez_Gene (NCBI)GOLPH3L    golgi phosphoprotein 3 like
AliasesGPP34R
GeneCards (Weizmann)GOLPH3L
Ensembl hg19 (Hinxton)ENSG00000143457 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143457 [Gene_View]  ENSG00000143457 [Sequence]  chr1:150646230-150697154 [Contig_View]  GOLPH3L [Vega]
ICGC DataPortalENSG00000143457
TCGA cBioPortalGOLPH3L
AceView (NCBI)GOLPH3L
Genatlas (Paris)GOLPH3L
SOURCE (Princeton)GOLPH3L
Genetics Home Reference (NIH)GOLPH3L
Genomic and cartography
GoldenPath hg38 (UCSC)GOLPH3L  -     chr1:150646230-150697154 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLPH3L  -     1q21.3   [Description]    (hg19-Feb_2009)
GoldenPathGOLPH3L - 1q21.3 [CytoView hg19]  GOLPH3L - 1q21.3 [CytoView hg38]
ImmunoBaseENSG00000143457
Genome Data Viewer NCBIGOLPH3L [Mapview hg19]  
OMIM612208   
Gene and transcription
Genbank (Entrez)AJ296153 AK001549 AK300635 AK315594 BC013870
RefSeq transcript (Entrez)NM_018178
Consensus coding sequences : CCDS (NCBI)GOLPH3L
Gene ExpressionGOLPH3L [ NCBI-GEO ]   GOLPH3L [ EBI - ARRAY_EXPRESS ]   GOLPH3L [ SEEK ]   GOLPH3L [ MEM ]
Gene Expression Viewer (FireBrowse)GOLPH3L [ Firebrowse - Broad ]
GenevisibleExpression of GOLPH3L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55204
GTEX Portal (Tissue expression)GOLPH3L
Human Protein AtlasENSG00000143457-GOLPH3L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4A5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4A5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4A5
PhosPhoSitePlusQ9H4A5
Domains : Interpro (EBI)GPP34-like    GPP34-like_sf   
Domain families : Pfam (Sanger)GPP34 (PF05719)   
Domain families : Pfam (NCBI)pfam05719   
Conserved Domain (NCBI)GOLPH3L
SuperfamilyQ9H4A5
AlphaFold pdb e-kbQ9H4A5   
Human Protein Atlas [tissue]ENSG00000143457-GOLPH3L [tissue]
HPRD17048
Protein Interaction databases
DIP (DOE-UCLA)Q9H4A5
IntAct (EBI)Q9H4A5
BioGRIDGOLPH3L
STRING (EMBL)GOLPH3L
ZODIACGOLPH3L
Ontologies - Pathways
QuickGOQ9H4A5
Ontology : AmiGOGolgi membrane  protein binding  Golgi apparatus  trans-Golgi network  cytosol  cytosol  retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  Golgi organization  Golgi organization  Golgi cisterna  Golgi cisterna membrane  trans-Golgi network membrane  Golgi to plasma membrane protein transport  Golgi vesicle budding  positive regulation of protein secretion  phosphatidylinositol-4-phosphate binding  phosphatidylinositol-4-phosphate binding  
Ontology : EGO-EBIGolgi membrane  protein binding  Golgi apparatus  trans-Golgi network  cytosol  cytosol  retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  Golgi organization  Golgi organization  Golgi cisterna  Golgi cisterna membrane  trans-Golgi network membrane  Golgi to plasma membrane protein transport  Golgi vesicle budding  positive regulation of protein secretion  phosphatidylinositol-4-phosphate binding  phosphatidylinositol-4-phosphate binding  
Pathways : KEGGTranscriptional misregulation in cancer   
NDEx NetworkGOLPH3L
Atlas of Cancer Signalling NetworkGOLPH3L
Wikipedia pathwaysGOLPH3L
Orthology - Evolution
OrthoDB55204
GeneTree (enSembl)ENSG00000143457
Phylogenetic Trees/Animal Genes : TreeFamGOLPH3L
Homologs : HomoloGeneGOLPH3L
Homology/Alignments : Family Browser (UCSC)GOLPH3L
Gene fusions - Rearrangements
Fusion : MitelmanCCP110::GOLPH3L [16p12.3/1q21.3]  
Fusion : MitelmanGOLPH3L::CTSS [1q21.3/1q21.3]  
Fusion : MitelmanGOLPH3L::HORMAD1 [1q21.3/1q21.3]  
Fusion : QuiverGOLPH3L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLPH3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLPH3L
dbVarGOLPH3L
ClinVarGOLPH3L
MonarchGOLPH3L
1000_GenomesGOLPH3L 
Exome Variant ServerGOLPH3L
GNOMAD BrowserENSG00000143457
Varsome BrowserGOLPH3L
ACMGGOLPH3L variants
VarityQ9H4A5
Genomic Variants (DGV)GOLPH3L [DGVbeta]
DECIPHERGOLPH3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLPH3L 
Mutations
ICGC Data PortalGOLPH3L 
TCGA Data PortalGOLPH3L 
Broad Tumor PortalGOLPH3L
OASIS PortalGOLPH3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLPH3L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGOLPH3L
Mutations and Diseases : HGMDGOLPH3L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGOLPH3L
DgiDB (Drug Gene Interaction Database)GOLPH3L
DoCM (Curated mutations)GOLPH3L
CIViC (Clinical Interpretations of Variants in Cancer)GOLPH3L
Cancer3DGOLPH3L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612208   
Orphanet
DisGeNETGOLPH3L
MedgenGOLPH3L
Genetic Testing Registry GOLPH3L
NextProtQ9H4A5 [Medical]
GENETestsGOLPH3L
Target ValidationGOLPH3L
Huge Navigator GOLPH3L [HugePedia]
ClinGenGOLPH3L
Clinical trials, drugs, therapy
MyCancerGenomeGOLPH3L
Protein Interactions : CTDGOLPH3L
Pharm GKB GenePA134922683
PharosQ9H4A5
Clinical trialGOLPH3L
Miscellaneous
canSAR (ICR)GOLPH3L
HarmonizomeGOLPH3L
ARCHS4GOLPH3L
DataMed IndexGOLPH3L
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGOLPH3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sun Jan 16 18:12:49 CET 2022

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