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GOLPH3L (golgi phosphoprotein 3 like)

Identity

Alias_namesgolgi phosphoprotein 3-like
Alias_symbol (synonym)GPP34R
Other alias
HGNC (Hugo) GOLPH3L
LocusID (NCBI) 55204
Atlas_Id 54337
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 150646225 and ends at 150697196 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANP32E (1q21.2) / GOLPH3L (1q21.3)BCAS3 (17q23.2) / GOLPH3L (1q21.3)BCR (22q11.23) / GOLPH3L (1q21.3)
CCP110 (16p12.3) / GOLPH3L (1q21.3)GOLPH3L (1q21.3) / AKT3 (1q43)GOLPH3L (1q21.3) / CTSS (1q21.3)
GOLPH3L (1q21.3) / HACD3 (15q22.31)GOLPH3L (1q21.3) / HORMAD1 (1q21.3)RPRD2 (1q21.3) / GOLPH3L (1q21.3)
GOLPH3L 1q21.3 / HORMAD1 1q21.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)GOLPH3L   24882
Cards
Entrez_Gene (NCBI)GOLPH3L  55204  golgi phosphoprotein 3 like
AliasesGPP34R
GeneCards (Weizmann)GOLPH3L
Ensembl hg19 (Hinxton)ENSG00000143457 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143457 [Gene_View]  chr1:150646225-150697196 [Contig_View]  GOLPH3L [Vega]
ICGC DataPortalENSG00000143457
TCGA cBioPortalGOLPH3L
AceView (NCBI)GOLPH3L
Genatlas (Paris)GOLPH3L
WikiGenes55204
SOURCE (Princeton)GOLPH3L
Genetics Home Reference (NIH)GOLPH3L
Genomic and cartography
GoldenPath hg38 (UCSC)GOLPH3L  -     chr1:150646225-150697196 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLPH3L  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblGOLPH3L - 1q21.3 [CytoView hg19]  GOLPH3L - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIGOLPH3L [Mapview hg19]  GOLPH3L [Mapview hg38]
OMIM612208   
Gene and transcription
Genbank (Entrez)AJ296153 AK001549 AK300635 AK315594 BC013870
RefSeq transcript (Entrez)NM_018178
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLPH3L
Cluster EST : UnigeneHs.203699 [ NCBI ]
CGAP (NCI)Hs.203699
Alternative Splicing GalleryENSG00000143457
Gene ExpressionGOLPH3L [ NCBI-GEO ]   GOLPH3L [ EBI - ARRAY_EXPRESS ]   GOLPH3L [ SEEK ]   GOLPH3L [ MEM ]
Gene Expression Viewer (FireBrowse)GOLPH3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55204
GTEX Portal (Tissue expression)GOLPH3L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4A5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4A5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4A5
Splice isoforms : SwissVarQ9H4A5
PhosPhoSitePlusQ9H4A5
Domains : Interpro (EBI)GPP34-like   
Domain families : Pfam (Sanger)GPP34 (PF05719)   
Domain families : Pfam (NCBI)pfam05719   
Conserved Domain (NCBI)GOLPH3L
DMDM Disease mutations55204
Blocks (Seattle)GOLPH3L
SuperfamilyQ9H4A5
Human Protein AtlasENSG00000143457
Peptide AtlasQ9H4A5
HPRD17048
IPIIPI00012313   IPI00514951   IPI00922172   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4A5
IntAct (EBI)Q9H4A5
FunCoupENSG00000143457
BioGRIDGOLPH3L
STRING (EMBL)GOLPH3L
ZODIACGOLPH3L
Ontologies - Pathways
QuickGOQ9H4A5
Ontology : AmiGOGolgi membrane  protein binding  trans-Golgi network  cytosol  retrograde vesicle-mediated transport, Golgi to ER  Golgi organization  Golgi cisterna  Golgi cisterna membrane  trans-Golgi network membrane  Golgi to plasma membrane protein transport  Golgi vesicle budding  positive regulation of protein secretion  phosphatidylinositol-4-phosphate binding  
Ontology : EGO-EBIGolgi membrane  protein binding  trans-Golgi network  cytosol  retrograde vesicle-mediated transport, Golgi to ER  Golgi organization  Golgi cisterna  Golgi cisterna membrane  trans-Golgi network membrane  Golgi to plasma membrane protein transport  Golgi vesicle budding  positive regulation of protein secretion  phosphatidylinositol-4-phosphate binding  
Pathways : KEGGTranscriptional misregulation in cancer   
NDEx NetworkGOLPH3L
Atlas of Cancer Signalling NetworkGOLPH3L
Wikipedia pathwaysGOLPH3L
Orthology - Evolution
OrthoDB55204
GeneTree (enSembl)ENSG00000143457
Phylogenetic Trees/Animal Genes : TreeFamGOLPH3L
HOVERGENQ9H4A5
HOGENOMQ9H4A5
Homologs : HomoloGeneGOLPH3L
Homology/Alignments : Family Browser (UCSC)GOLPH3L
Gene fusions - Rearrangements
Fusion : MitelmanCCP110/GOLPH3L [16p12.3/1q21.3]  [t(1;16)(q21;p12)]  
Fusion : MitelmanGOLPH3L/CTSS [1q21.3/1q21.3]  [t(1;1)(q21;q21)]  
Fusion : MitelmanGOLPH3L/HORMAD1 [1q21.3/1q21.3]  [t(1;1)(q21;q21)]  
Fusion: TCGAGOLPH3L 1q21.3 HORMAD1 1q21.3 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLPH3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLPH3L
dbVarGOLPH3L
ClinVarGOLPH3L
1000_GenomesGOLPH3L 
Exome Variant ServerGOLPH3L
ExAC (Exome Aggregation Consortium)GOLPH3L (select the gene name)
Genetic variants : HAPMAP55204
Genomic Variants (DGV)GOLPH3L [DGVbeta]
DECIPHERGOLPH3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLPH3L 
Mutations
ICGC Data PortalGOLPH3L 
TCGA Data PortalGOLPH3L 
Broad Tumor PortalGOLPH3L
OASIS PortalGOLPH3L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLPH3L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLPH3L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLPH3L
DgiDB (Drug Gene Interaction Database)GOLPH3L
DoCM (Curated mutations)GOLPH3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLPH3L (select a term)
intoGenGOLPH3L
Cancer3DGOLPH3L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612208   
Orphanet
MedgenGOLPH3L
Genetic Testing Registry GOLPH3L
NextProtQ9H4A5 [Medical]
TSGene55204
GENETestsGOLPH3L
Target ValidationGOLPH3L
Huge Navigator GOLPH3L [HugePedia]
snp3D : Map Gene to Disease55204
BioCentury BCIQGOLPH3L
ClinGenGOLPH3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55204
Chemical/Pharm GKB GenePA134922683
Clinical trialGOLPH3L
Miscellaneous
canSAR (ICR)GOLPH3L (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLPH3L
EVEXGOLPH3L
GoPubMedGOLPH3L
iHOPGOLPH3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:54:33 CEST 2017

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