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GOLT1A (golgi transport 1A)

Identity

Alias_namesgolgi transport 1 homolog A (S. cerevisiae)
Alias_symbol (synonym)FLJ42654
CGI-141
YMR292W
GOT1
MGC62027
Other aliasHMFN1187
hGOT1b
HGNC (Hugo) GOLT1A
LocusID (NCBI) 127845
Atlas_Id 55860
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 204198160 and ends at 204214092 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GOLT1A (1q32.1) / IL10RB (21q22.11)GOLT1A (1q32.1) / KISS1 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLT1A   24766
Cards
Entrez_Gene (NCBI)GOLT1A  127845  golgi transport 1A
AliasesCGI-141; GOT1; HMFN1187; YMR292W; 
hGOT1b
GeneCards (Weizmann)GOLT1A
Ensembl hg19 (Hinxton)ENSG00000174567 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174567 [Gene_View]  chr1:204198160-204214092 [Contig_View]  GOLT1A [Vega]
ICGC DataPortalENSG00000174567
TCGA cBioPortalGOLT1A
AceView (NCBI)GOLT1A
Genatlas (Paris)GOLT1A
WikiGenes127845
SOURCE (Princeton)GOLT1A
Genetics Home Reference (NIH)GOLT1A
Genomic and cartography
GoldenPath hg38 (UCSC)GOLT1A  -     chr1:204198160-204214092 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOLT1A  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblGOLT1A - 1q32.1 [CytoView hg19]  GOLT1A - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIGOLT1A [Mapview hg19]  GOLT1A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075871 AK124645 BC058832 HQ447639
RefSeq transcript (Entrez)NM_198447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOLT1A
Cluster EST : UnigeneHs.532401 [ NCBI ]
CGAP (NCI)Hs.532401
Alternative Splicing GalleryENSG00000174567
Gene ExpressionGOLT1A [ NCBI-GEO ]   GOLT1A [ EBI - ARRAY_EXPRESS ]   GOLT1A [ SEEK ]   GOLT1A [ MEM ]
Gene Expression Viewer (FireBrowse)GOLT1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127845
GTEX Portal (Tissue expression)GOLT1A
Human Protein AtlasENSG00000174567-GOLT1A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVE7
Splice isoforms : SwissVarQ6ZVE7
PhosPhoSitePlusQ6ZVE7
Domains : Interpro (EBI)Vesicle_transpt_Got1/SFT2   
Domain families : Pfam (Sanger)Got1 (PF04178)   
Domain families : Pfam (NCBI)pfam04178   
Conserved Domain (NCBI)GOLT1A
DMDM Disease mutations127845
Blocks (Seattle)GOLT1A
SuperfamilyQ6ZVE7
Human Protein Atlas [tissue]ENSG00000174567-GOLT1A [tissue]
Peptide AtlasQ6ZVE7
HPRD13465
IPIIPI00394806   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVE7
IntAct (EBI)Q6ZVE7
FunCoupENSG00000174567
BioGRIDGOLT1A
STRING (EMBL)GOLT1A
ZODIACGOLT1A
Ontologies - Pathways
QuickGOQ6ZVE7
Ontology : AmiGOGolgi membrane  protein transport  integral component of membrane  vesicle-mediated transport  
Ontology : EGO-EBIGolgi membrane  protein transport  integral component of membrane  vesicle-mediated transport  
NDEx NetworkGOLT1A
Atlas of Cancer Signalling NetworkGOLT1A
Wikipedia pathwaysGOLT1A
Orthology - Evolution
OrthoDB127845
GeneTree (enSembl)ENSG00000174567
Phylogenetic Trees/Animal Genes : TreeFamGOLT1A
HOVERGENQ6ZVE7
HOGENOMQ6ZVE7
Homologs : HomoloGeneGOLT1A
Homology/Alignments : Family Browser (UCSC)GOLT1A
Gene fusions - Rearrangements
Fusion: Tumor Portal GOLT1A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLT1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLT1A
dbVarGOLT1A
ClinVarGOLT1A
1000_GenomesGOLT1A 
Exome Variant ServerGOLT1A
ExAC (Exome Aggregation Consortium)ENSG00000174567
GNOMAD BrowserENSG00000174567
Genetic variants : HAPMAP127845
Genomic Variants (DGV)GOLT1A [DGVbeta]
DECIPHERGOLT1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOLT1A 
Mutations
ICGC Data PortalGOLT1A 
TCGA Data PortalGOLT1A 
Broad Tumor PortalGOLT1A
OASIS PortalGOLT1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLT1A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLT1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLT1A
DgiDB (Drug Gene Interaction Database)GOLT1A
DoCM (Curated mutations)GOLT1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLT1A (select a term)
intoGenGOLT1A
Cancer3DGOLT1A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGOLT1A
Genetic Testing Registry GOLT1A
NextProtQ6ZVE7 [Medical]
TSGene127845
GENETestsGOLT1A
Target ValidationGOLT1A
Huge Navigator GOLT1A [HugePedia]
snp3D : Map Gene to Disease127845
BioCentury BCIQGOLT1A
ClinGenGOLT1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127845
Chemical/Pharm GKB GenePA134874119
Clinical trialGOLT1A
Miscellaneous
canSAR (ICR)GOLT1A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLT1A
EVEXGOLT1A
GoPubMedGOLT1A
iHOPGOLT1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:51:41 CET 2017

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