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GOLT1B (golgi transport 1B)

Identity

Alias_namesgolgi transport 1 homolog B (S. cerevisiae)
Alias_symbol (synonym)CGI-141
YMR292W
GOT1
Other aliasGCT2
GOT1B
HGNC (Hugo) GOLT1B
LocusID (NCBI) 51026
Atlas_Id 63910
Location 12p12.1  [Link to chromosome band 12p12]
Location_base_pair Starts at 21654699 and ends at 21671337 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CPM (12q15) / GOLT1B (12p12.1)GOLT1B (12p12.1) / JA040725 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOLT1B   20175
Cards
Entrez_Gene (NCBI)GOLT1B  51026  golgi transport 1B
AliasesCGI-141; GCT2; GOT1; GOT1B; 
YMR292W
GeneCards (Weizmann)GOLT1B
Ensembl hg19 (Hinxton)ENSG00000111711 [Gene_View]  chr12:21654699-21671337 [Contig_View]  GOLT1B [Vega]
Ensembl hg38 (Hinxton)ENSG00000111711 [Gene_View]  chr12:21654699-21671337 [Contig_View]  GOLT1B [Vega]
ICGC DataPortalENSG00000111711
TCGA cBioPortalGOLT1B
AceView (NCBI)GOLT1B
Genatlas (Paris)GOLT1B
WikiGenes51026
SOURCE (Princeton)GOLT1B
Genetics Home Reference (NIH)GOLT1B
Genomic and cartography
GoldenPath hg19 (UCSC)GOLT1B  -     chr12:21654699-21671337 +  12p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GOLT1B  -     12p12.1   [Description]    (hg38-Dec_2013)
EnsemblGOLT1B - 12p12.1 [CytoView hg19]  GOLT1B - 12p12.1 [CytoView hg38]
Mapping of homologs : NCBIGOLT1B [Mapview hg19]  GOLT1B [Mapview hg38]
OMIM615078   
Gene and transcription
Genbank (Entrez)AA910170 AB097020 AF068292 AF151899 AK026999
RefSeq transcript (Entrez)NM_016072
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383
Consensus coding sequences : CCDS (NCBI)GOLT1B
Cluster EST : UnigeneHs.62275 [ NCBI ]
CGAP (NCI)Hs.62275
Alternative Splicing GalleryENSG00000111711
Gene ExpressionGOLT1B [ NCBI-GEO ]   GOLT1B [ EBI - ARRAY_EXPRESS ]   GOLT1B [ SEEK ]   GOLT1B [ MEM ]
Gene Expression Viewer (FireBrowse)GOLT1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51026
GTEX Portal (Tissue expression)GOLT1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3E0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3E0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3E0
Splice isoforms : SwissVarQ9Y3E0
PhosPhoSitePlusQ9Y3E0
Domains : Interpro (EBI)Vesicle_transpt_Got1/SFT2   
Domain families : Pfam (Sanger)Got1 (PF04178)   
Domain families : Pfam (NCBI)pfam04178   
Conserved Domain (NCBI)GOLT1B
DMDM Disease mutations51026
Blocks (Seattle)GOLT1B
SuperfamilyQ9Y3E0
Human Protein AtlasENSG00000111711
Peptide AtlasQ9Y3E0
HPRD13035
IPIIPI00007061   IPI01011139   IPI01011741   IPI01010669   IPI00792074   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3E0
IntAct (EBI)Q9Y3E0
FunCoupENSG00000111711
BioGRIDGOLT1B
STRING (EMBL)GOLT1B
ZODIACGOLT1B
Ontologies - Pathways
QuickGOQ9Y3E0
Ontology : AmiGOGolgi membrane  signal transducer activity  endoplasmic reticulum  lipid metabolic process  signal transduction  protein transport  membrane  integral component of membrane  vesicle-mediated transport  lipase activity  positive regulation of I-kappaB kinase/NF-kappaB signaling  bounding membrane of organelle  
Ontology : EGO-EBIGolgi membrane  signal transducer activity  endoplasmic reticulum  lipid metabolic process  signal transduction  protein transport  membrane  integral component of membrane  vesicle-mediated transport  lipase activity  positive regulation of I-kappaB kinase/NF-kappaB signaling  bounding membrane of organelle  
NDEx NetworkGOLT1B
Atlas of Cancer Signalling NetworkGOLT1B
Wikipedia pathwaysGOLT1B
Orthology - Evolution
OrthoDB51026
GeneTree (enSembl)ENSG00000111711
Phylogenetic Trees/Animal Genes : TreeFamGOLT1B
HOVERGENQ9Y3E0
HOGENOMQ9Y3E0
Homologs : HomoloGeneGOLT1B
Homology/Alignments : Family Browser (UCSC)GOLT1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOLT1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOLT1B
dbVarGOLT1B
ClinVarGOLT1B
1000_GenomesGOLT1B 
Exome Variant ServerGOLT1B
ExAC (Exome Aggregation Consortium)GOLT1B (select the gene name)
Genetic variants : HAPMAP51026
Genomic Variants (DGV)GOLT1B [DGVbeta]
DECIPHER (Syndromes)12:21654699-21671337  ENSG00000111711
CONAN: Copy Number AnalysisGOLT1B 
Mutations
ICGC Data PortalGOLT1B 
TCGA Data PortalGOLT1B 
Broad Tumor PortalGOLT1B
OASIS PortalGOLT1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOLT1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOLT1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOLT1B
DgiDB (Drug Gene Interaction Database)GOLT1B
DoCM (Curated mutations)GOLT1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOLT1B (select a term)
intoGenGOLT1B
Cancer3DGOLT1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615078   
Orphanet
MedgenGOLT1B
Genetic Testing Registry GOLT1B
NextProtQ9Y3E0 [Medical]
TSGene51026
GENETestsGOLT1B
Huge Navigator GOLT1B [HugePedia]
snp3D : Map Gene to Disease51026
BioCentury BCIQGOLT1B
ClinGenGOLT1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51026
Chemical/Pharm GKB GenePA134898810
Clinical trialGOLT1B
Miscellaneous
canSAR (ICR)GOLT1B (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOLT1B
EVEXGOLT1B
GoPubMedGOLT1B
iHOPGOLT1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:31 CET 2017

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