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GON4L (gon-4-like (C. elegans))

Identity

Alias_namesGON4
gon-4 homolog (C.elegans)
gon-4-like (C. elegans)
Alias_symbol (synonym)FLJ20203
GON-4
YARP
HGNC (Hugo) GON4L
LocusID (NCBI) 54856
Atlas_Id 63911
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155719449 and ends at 155829191 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GON4L (1q22) / IQGAP3 (1q22)GON4L (1q22) / PIPOX (17q11.2)GON4L (1q22) / PRPF6 (20q13.33)
GPR157 (1p36.23) / GON4L (1q22)LRRC8A (9q34.11) / GON4L (1q22)GON4L PIPOX
GON4L IQGAP3LRRC8A GON4LGPR157 GON4L

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GON4L   25973
Cards
Entrez_Gene (NCBI)GON4L  54856  gon-4-like (C. elegans)
AliasesGON-4; GON4; YARP
GeneCards (Weizmann)GON4L
Ensembl hg19 (Hinxton)ENSG00000116580 [Gene_View]  chr1:155719449-155829191 [Contig_View]  GON4L [Vega]
Ensembl hg38 (Hinxton)ENSG00000116580 [Gene_View]  chr1:155719449-155829191 [Contig_View]  GON4L [Vega]
ICGC DataPortalENSG00000116580
TCGA cBioPortalGON4L
AceView (NCBI)GON4L
Genatlas (Paris)GON4L
WikiGenes54856
SOURCE (Princeton)GON4L
Genetics Home Reference (NIH)GON4L
Genomic and cartography
GoldenPath hg19 (UCSC)GON4L  -     chr1:155719449-155829191 -  1q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GON4L  -     1q22   [Description]    (hg38-Dec_2013)
EnsemblGON4L - 1q22 [CytoView hg19]  GON4L - 1q22 [CytoView hg38]
Mapping of homologs : NCBIGON4L [Mapview hg19]  GON4L [Mapview hg38]
OMIM610393   
Gene and transcription
Genbank (Entrez)AB046826 AB195687 AB195688 AB232668 AI476308
RefSeq transcript (Entrez)NM_001037533 NM_001282856 NM_001282858 NM_001282860 NM_001282861 NM_032292
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)GON4L
Cluster EST : UnigeneHs.656361 [ NCBI ]
CGAP (NCI)Hs.656361
Alternative Splicing GalleryENSG00000116580
Gene ExpressionGON4L [ NCBI-GEO ]   GON4L [ EBI - ARRAY_EXPRESS ]   GON4L [ SEEK ]   GON4L [ MEM ]
Gene Expression Viewer (FireBrowse)GON4L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54856
GTEX Portal (Tissue expression)GON4L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3T8J9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3T8J9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3T8J9
Splice isoforms : SwissVarQ3T8J9
PhosPhoSitePlusQ3T8J9
Domaine pattern : Prosite (Expaxy)MYB_LIKE (PS50090)    PAH (PS51477)   
Domains : Interpro (EBI)Homeodomain-like    Myb-like_dom    PAH    SANT/Myb   
Domain families : Pfam (Sanger)PAH (PF02671)   
Domain families : Pfam (NCBI)pfam02671   
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)GON4L
DMDM Disease mutations54856
Blocks (Seattle)GON4L
SuperfamilyQ3T8J9
Human Protein AtlasENSG00000116580
Peptide AtlasQ3T8J9
HPRD13370
IPIIPI00375803   IPI00657925   IPI00552561   IPI01013563   IPI00450987   IPI00018703   
Protein Interaction databases
DIP (DOE-UCLA)Q3T8J9
IntAct (EBI)Q3T8J9
FunCoupENSG00000116580
BioGRIDGON4L
STRING (EMBL)GON4L
ZODIACGON4L
Ontologies - Pathways
QuickGOQ3T8J9
Ontology : AmiGODNA binding  chromatin binding  nucleus  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  chromatin binding  nucleus  regulation of transcription, DNA-templated  
NDEx NetworkGON4L
Atlas of Cancer Signalling NetworkGON4L
Wikipedia pathwaysGON4L
Orthology - Evolution
OrthoDB54856
GeneTree (enSembl)ENSG00000116580
Phylogenetic Trees/Animal Genes : TreeFamGON4L
HOVERGENQ3T8J9
HOGENOMQ3T8J9
Homologs : HomoloGeneGON4L
Homology/Alignments : Family Browser (UCSC)GON4L
Gene fusions - Rearrangements
Fusion: TCGAGON4L PIPOX
Fusion: TCGAGON4L IQGAP3
Fusion: TCGALRRC8A GON4L
Fusion: TCGAGPR157 GON4L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGON4L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GON4L
dbVarGON4L
ClinVarGON4L
1000_GenomesGON4L 
Exome Variant ServerGON4L
ExAC (Exome Aggregation Consortium)GON4L (select the gene name)
Genetic variants : HAPMAP54856
Genomic Variants (DGV)GON4L [DGVbeta]
DECIPHER (Syndromes)1:155719449-155829191  ENSG00000116580
CONAN: Copy Number AnalysisGON4L 
Mutations
ICGC Data PortalGON4L 
TCGA Data PortalGON4L 
Broad Tumor PortalGON4L
OASIS PortalGON4L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGON4L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGON4L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GON4L
DgiDB (Drug Gene Interaction Database)GON4L
DoCM (Curated mutations)GON4L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GON4L (select a term)
intoGenGON4L
Cancer3DGON4L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610393   
Orphanet
MedgenGON4L
Genetic Testing Registry GON4L
NextProtQ3T8J9 [Medical]
TSGene54856
GENETestsGON4L
Huge Navigator GON4L [HugePedia]
snp3D : Map Gene to Disease54856
BioCentury BCIQGON4L
ClinGenGON4L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54856
Chemical/Pharm GKB GenePA142671723
Clinical trialGON4L
Miscellaneous
canSAR (ICR)GON4L (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGON4L
EVEXGON4L
GoPubMedGON4L
iHOPGON4L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Dec 29 13:26:33 CET 2016

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