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GOPC (golgi-associated PDZ and coiled-coil motif containing)

Identity

Other namesCAL
FIG
GOPC1
PIST
dJ94G16.2
HGNC (Hugo) GOPC
LocusID (NCBI) 57120
Location 6q22.1
Location_base_pair Starts at 117881433 and ends at 117923705 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GOPC   17643
Cards
Entrez_Gene (NCBI)GOPC  57120  golgi-associated PDZ and coiled-coil motif containing
GeneCards (Weizmann)GOPC
Ensembl (Hinxton)ENSG00000047932 [Gene_View]  chr6:117881433-117923705 [Contig_View]  GOPC [Vega]
ICGC DataPortalENSG00000047932
AceView (NCBI)GOPC
Genatlas (Paris)GOPC
WikiGenes57120
SOURCE (Princeton)NM_001017408 NM_020399
Genomic and cartography
GoldenPath (UCSC)GOPC  -  6q22.1   chr6:117881433-117923705 -  6q22.1   [Description]    (hg19-Feb_2009)
EnsemblGOPC - 6q22.1 [CytoView]
Mapping of homologs : NCBIGOPC [Mapview]
OMIM102530   606845   
Gene and transcription
Genbank (Entrez)AB209385 AF287894 AF450008 AJ420540 AK025074
RefSeq transcript (Entrez)NM_001017408 NM_020399
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_025741 NW_001838990 NW_004929328
Consensus coding sequences : CCDS (NCBI)GOPC
Cluster EST : UnigeneHs.191539 [ NCBI ]
CGAP (NCI)Hs.191539
Alternative Splicing : Fast-db (Paris)GSHG0026874
Alternative Splicing GalleryENSG00000047932
Gene ExpressionGOPC [ NCBI-GEO ]     GOPC [ SEEK ]   GOPC [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD26 (Uniprot)
NextProtQ9HD26  [Medical]
With graphics : InterProQ9HD26
Splice isoforms : SwissVarQ9HD26 (Swissvar)
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ   
Related proteins : CluSTrQ9HD26
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
DMDM Disease mutations57120
Blocks (Seattle)Q9HD26
PDB (SRS)2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78   
PDB (PDBSum)2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78   
PDB (IMB)2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78   
PDB (RSDB)2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78   
Human Protein AtlasENSG00000047932
Peptide AtlasQ9HD26
HPRD06024
IPIIPI00186721   IPI00843890   IPI00556252   IPI01011152   
Protein Interaction databases
DIP (DOE-UCLA)Q9HD26
IntAct (EBI)Q9HD26
FunCoupENSG00000047932
BioGRIDGOPC
IntegromeDBGOPC
STRING (EMBL)GOPC
Ontologies - Pathways
QuickGOQ9HD26
Ontology : AmiGOGolgi membrane  small GTPase regulator activity  frizzled binding  protein binding  cytoplasm  Golgi apparatus  plasma membrane  ER to Golgi vesicle-mediated transport  Golgi to plasma membrane transport  spermatid nucleus differentiation  protein C-terminus binding  postsynaptic density  protein transport  membrane  cell junction  trans-Golgi network transport vesicle  trans-Golgi network transport vesicle  dendrite  protein homodimerization activity  cytoplasmic sequestering of CFTR protein  protein complex  ion channel binding  apical protein localization  postsynaptic membrane  regulation of catalytic activity  protein homooligomerization  
Ontology : EGO-EBIGolgi membrane  small GTPase regulator activity  frizzled binding  protein binding  cytoplasm  Golgi apparatus  plasma membrane  ER to Golgi vesicle-mediated transport  Golgi to plasma membrane transport  spermatid nucleus differentiation  protein C-terminus binding  postsynaptic density  protein transport  membrane  cell junction  trans-Golgi network transport vesicle  trans-Golgi network transport vesicle  dendrite  protein homodimerization activity  cytoplasmic sequestering of CFTR protein  protein complex  ion channel binding  apical protein localization  postsynaptic membrane  regulation of catalytic activity  protein homooligomerization  
Protein Interaction DatabaseGOPC
Wikipedia pathwaysGOPC
Gene fusion - rearrangments
Rearrangement : COSMICGOPC [6q22.1]  -  ROS1 [6q22.1]
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)GOPC
SNP (GeneSNP Utah)GOPC
SNP : HGBaseGOPC
Genetic variants : HAPMAPGOPC
1000_GenomesGOPC 
ICGC programENSG00000047932 
Cancer Gene: CensusGOPC 
CONAN: Copy Number AnalysisGOPC 
Somatic Mutations in Cancer : COSMICGOPC 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)6:117881433-117923705
Mutations and Diseases : HGMDGOPC
OMIM102530    606845   
MedgenGOPC
GENETestsGOPC
Disease Genetic AssociationGOPC
Huge Navigator GOPC [HugePedia]  GOPC [HugeCancerGEM]
Genomic VariantsGOPC  GOPC [DGVbeta]
Exome VariantGOPC
dbVarGOPC
ClinVarGOPC
snp3D : Map Gene to Disease57120
General knowledge
Homologs : HomoloGeneGOPC
Homology/Alignments : Family Browser (UCSC)GOPC
Phylogenetic Trees/Animal Genes : TreeFamGOPC
Chemical/Protein Interactions : CTD57120
Chemical/Pharm GKB GenePA134904944
Clinical trialGOPC
Cancer Resource (Charite)ENSG00000047932
Other databases
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
CoreMineGOPC
GoPubMedGOPC
iHOPGOPC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 17:28:02 CET 2014

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