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GOPC (golgi-associated PDZ and coiled-coil motif containing)

Identity

Other namesCAL
FIG
GOPC1
PIST
dJ94G16.2
HGNC (Hugo) GOPC
LocusID (NCBI) 57120
Atlas_Id 45928
Location 6q22.1
Location_base_pair Starts at 117881433 and ends at 117923705 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
GOPC 6q22.1 / ROS1 6q22.1GOPC 6q22.1 / ABLIM1 10q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas)
  Lung: Translocations in Adenocarcinoma

External links

Nomenclature
HGNC (Hugo)GOPC   17643
Cards
Entrez_Gene (NCBI)GOPC  57120  golgi-associated PDZ and coiled-coil motif containing
GeneCards (Weizmann)GOPC
Ensembl hg19 (Hinxton)ENSG00000047932 [Gene_View]  chr6:117881433-117923705 [Contig_View]  GOPC [Vega]
Ensembl hg38 (Hinxton)ENSG00000047932 [Gene_View]  chr6:117881433-117923705 [Contig_View]  GOPC [Vega]
ICGC DataPortalENSG00000047932
TCGA cBioPortalGOPC
AceView (NCBI)GOPC
Genatlas (Paris)GOPC
WikiGenes57120
SOURCE (Princeton)GOPC
Genomic and cartography
GoldenPath hg19 (UCSC)GOPC  -     chr6:117881433-117923705 -  6q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GOPC  -     6q22.1   [Description]    (hg38-Dec_2013)
EnsemblGOPC - 6q22.1 [CytoView hg19]  GOPC - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBIGOPC [Mapview hg19]  GOPC [Mapview hg38]
OMIM606845   
Gene and transcription
Genbank (Entrez)AB209385 AF287894 AF450008 AJ420540 AK025074
RefSeq transcript (Entrez)NM_001017408 NM_020399
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_025741 NW_004929328
Consensus coding sequences : CCDS (NCBI)GOPC
Cluster EST : UnigeneHs.191539 [ NCBI ]
CGAP (NCI)Hs.191539
Alternative Splicing : Fast-db (Paris)GSHG0026874
Alternative Splicing GalleryENSG00000047932
Gene ExpressionGOPC [ NCBI-GEO ]     GOPC [ SEEK ]   GOPC [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)57120
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD26 (Uniprot)
NextProtQ9HD26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD26
Splice isoforms : SwissVarQ9HD26 (Swissvar)
PhosPhoSitePlusQ9HD26
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)PDZ   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
DMDM Disease mutations57120
Blocks (Seattle)GOPC
PDB (SRS)2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78    4NMO    4NMP    4NMQ    4NMR    4NMS    4NMT    4NMV    4Q6H    4Q6S   
PDB (PDBSum)2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78    4NMO    4NMP    4NMQ    4NMR    4NMS    4NMT    4NMV    4Q6H    4Q6S   
PDB (IMB)2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78    4NMO    4NMP    4NMQ    4NMR    4NMS    4NMT    4NMV    4Q6H    4Q6S   
PDB (RSDB)2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78    4NMO    4NMP    4NMQ    4NMR    4NMS    4NMT    4NMV    4Q6H    4Q6S   
Structural Biology KnowledgeBase2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78    4NMO    4NMP    4NMQ    4NMR    4NMS    4NMT    4NMV    4Q6H    4Q6S   
SCOP (Structural Classification of Proteins)2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78    4NMO    4NMP    4NMQ    4NMR    4NMS    4NMT    4NMV    4Q6H    4Q6S   
CATH (Classification of proteins structures)2DC2    2LOB    4E34    4E35    4JOE    4JOF    4JOG    4JOH    4JOJ    4JOK    4JOP    4JOR    4K6Y    4K72    4K75    4K76    4K78    4NMO    4NMP    4NMQ    4NMR    4NMS    4NMT    4NMV    4Q6H    4Q6S   
Human Protein AtlasENSG00000047932
Peptide AtlasQ9HD26
HPRD06024
IPIIPI00186721   IPI00843890   IPI00556252   IPI01011152   
Protein Interaction databases
DIP (DOE-UCLA)Q9HD26
IntAct (EBI)Q9HD26
FunCoupENSG00000047932
BioGRIDGOPC
IntegromeDBGOPC
STRING (EMBL)GOPC
ZODIACGOPC
Ontologies - Pathways
QuickGOQ9HD26
Ontology : AmiGOprotein binding  cytoplasm  lysosomal membrane  Golgi apparatus  plasma membrane  plasma membrane  ER to Golgi vesicle-mediated transport  Golgi to plasma membrane transport  small GTPase mediated signal transduction  postsynaptic density  protein transport  membrane  cell junction  trans-Golgi network transport vesicle  trans-Golgi network transport vesicle  dendrite  Golgi-associated vesicle membrane  cytoplasmic sequestering of CFTR protein  protein complex  ion channel binding  apical protein localization  postsynaptic membrane  protein homooligomerization  
Ontology : EGO-EBIprotein binding  cytoplasm  lysosomal membrane  Golgi apparatus  plasma membrane  plasma membrane  ER to Golgi vesicle-mediated transport  Golgi to plasma membrane transport  small GTPase mediated signal transduction  postsynaptic density  protein transport  membrane  cell junction  trans-Golgi network transport vesicle  trans-Golgi network transport vesicle  dendrite  Golgi-associated vesicle membrane  cytoplasmic sequestering of CFTR protein  protein complex  ion channel binding  apical protein localization  postsynaptic membrane  protein homooligomerization  
Protein Interaction DatabaseGOPC
Atlas of Cancer Signalling NetworkGOPC
Wikipedia pathwaysGOPC
Orthology - Evolution
OrthoDB57120
GeneTree (enSembl)ENSG00000047932
Phylogenetic Trees/Animal Genes : TreeFamGOPC
Homologs : HomoloGeneGOPC
Homology/Alignments : Family Browser (UCSC)GOPC
Gene fusions - Rearrangements
Fusion: TCGAGOPC 6q22.1 ABLIM1 10q25.3 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerGOPC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOPC
dbVarGOPC
ClinVarGOPC
1000_GenomesGOPC 
Exome Variant ServerGOPC
Exome Aggregation Consortium (ExAC)ENSG00000047932
SNP (GeneSNP Utah)GOPC
SNP : HGBaseGOPC
Genetic variants : HAPMAPGOPC
Genomic Variants (DGV)GOPC [DGVbeta]
Mutations
ICGC Data PortalGOPC 
TCGA Data PortalGOPC 
Tumor PortalGOPC
TCGA Copy Number PortalGOPC
Cancer Gene: CensusGOPC 
Somatic Mutations in Cancer : COSMICGOPC 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOPC
DgiDB (Drug Gene Interaction Database)GOPC
DoCM (Curated mutations)GOPC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOPC (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)6:117881433-117923705
CONAN: Copy Number AnalysisGOPC 
Mutations and Diseases : HGMDGOPC
OMIM606845   
MedgenGOPC
NextProtQ9HD26 [Medical]
TSGene57120
GENETestsGOPC
Huge Navigator GOPC [HugePedia]  GOPC [HugeCancerGEM]
snp3D : Map Gene to Disease57120
BioCentury BCIQGOPC
General knowledge
Chemical/Protein Interactions : CTD57120
Chemical/Pharm GKB GenePA134904944
Clinical trialGOPC
Other databases
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOPC
GoPubMedGOPC
iHOPGOPC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:43:13 CET 2016

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