Atlas of Genetics and Cytogenetics in Oncology and Haematology

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GORAB (golgin, RAB6 interacting)

Identity

Alias (NCBI)GO
NTKLBP1
SCYL1BP1
HGNC (Hugo) GORAB
HGNC Alias symbFLJ11752
NTKL-BP1
GO
HGNC Alias namegerodermia osteodysplastica
 RAB6-interacting golgin
HGNC Previous nameSCYL1BP1
HGNC Previous nameSCY1-like 1 binding protein 1
 golgin, RAB6-interacting
LocusID (NCBI) 92344
Atlas_Id 51778
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 170532166 and ends at 170553834 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DCAF16 (4p15.31) / GORAB (1q24.2)GORAB (1q24.2) / DST (6p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GORAB   25676
Cards
Entrez_Gene (NCBI)GORAB    golgin, RAB6 interacting
AliasesGO; NTKLBP1; SCYL1BP1
GeneCards (Weizmann)GORAB
Ensembl hg19 (Hinxton)ENSG00000120370 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120370 [Gene_View]  ENSG00000120370 [Sequence]  chr1:170532166-170553834 [Contig_View]  GORAB [Vega]
ICGC DataPortalENSG00000120370
TCGA cBioPortalGORAB
AceView (NCBI)GORAB
Genatlas (Paris)GORAB
SOURCE (Princeton)GORAB
Genetics Home Reference (NIH)GORAB
Genomic and cartography
GoldenPath hg38 (UCSC)GORAB  -     chr1:170532166-170553834 +  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GORAB  -     1q24.2   [Description]    (hg19-Feb_2009)
GoldenPathGORAB - 1q24.2 [CytoView hg19]  GORAB - 1q24.2 [CytoView hg38]
ImmunoBaseENSG00000120370
genome Data Viewer NCBIGORAB [Mapview hg19]  
OMIM231070   607983   
Gene and transcription
Genbank (Entrez)AF143889 AK021814 AK057661 AK308339 BC035999
RefSeq transcript (Entrez)NM_001146039 NM_001320252 NM_152281
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GORAB
Alternative Splicing GalleryENSG00000120370
Gene ExpressionGORAB [ NCBI-GEO ]   GORAB [ EBI - ARRAY_EXPRESS ]   GORAB [ SEEK ]   GORAB [ MEM ]
Gene Expression Viewer (FireBrowse)GORAB [ Firebrowse - Broad ]
GenevisibleExpression of GORAB in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92344
GTEX Portal (Tissue expression)GORAB
Human Protein AtlasENSG00000120370-GORAB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T7V8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T7V8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T7V8
Splice isoforms : SwissVarQ5T7V8
PhosPhoSitePlusQ5T7V8
Domains : Interpro (EBI)GORAB   
Domain families : Pfam (Sanger)Transcrip_act (PF04949)   
Domain families : Pfam (NCBI)pfam04949   
Conserved Domain (NCBI)GORAB
Blocks (Seattle)GORAB
SuperfamilyQ5T7V8
Human Protein Atlas [tissue]ENSG00000120370-GORAB [tissue]
Peptide AtlasQ5T7V8
HPRD12144
IPIIPI00029521   IPI00647413   IPI00791549   IPI00795544   
Protein Interaction databases
DIP (DOE-UCLA)Q5T7V8
IntAct (EBI)Q5T7V8
BioGRIDGORAB
STRING (EMBL)GORAB
ZODIACGORAB
Ontologies - Pathways
QuickGOQ5T7V8
Ontology : AmiGOprotein binding  nucleoplasm  nucleolus  cytoplasm  Golgi apparatus  cytosol  hair follicle morphogenesis  positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning  non-motile cilium assembly  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleolus  cytoplasm  Golgi apparatus  cytosol  hair follicle morphogenesis  positive regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning  non-motile cilium assembly  
NDEx NetworkGORAB
Atlas of Cancer Signalling NetworkGORAB
Wikipedia pathwaysGORAB
Orthology - Evolution
OrthoDB92344
GeneTree (enSembl)ENSG00000120370
Phylogenetic Trees/Animal Genes : TreeFamGORAB
HOGENOMQ5T7V8
Homologs : HomoloGeneGORAB
Homology/Alignments : Family Browser (UCSC)GORAB
Gene fusions - Rearrangements
Fusion : QuiverGORAB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGORAB [hg38]
dbVarGORAB
ClinVarGORAB
MonarchGORAB
1000_GenomesGORAB 
Exome Variant ServerGORAB
GNOMAD BrowserENSG00000120370
Varsome BrowserGORAB
Genomic Variants (DGV)GORAB [DGVbeta]
DECIPHERGORAB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGORAB 
Mutations
ICGC Data PortalGORAB 
TCGA Data PortalGORAB 
Broad Tumor PortalGORAB
OASIS PortalGORAB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGORAB  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGORAB
Mutations and Diseases : HGMDGORAB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GORAB
DgiDB (Drug Gene Interaction Database)GORAB
DoCM (Curated mutations)GORAB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GORAB (select a term)
intoGenGORAB
Cancer3DGORAB(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM231070    607983   
Orphanet1993   
DisGeNETGORAB
MedgenGORAB
Genetic Testing Registry GORAB
NextProtQ5T7V8 [Medical]
GENETestsGORAB
Target ValidationGORAB
Huge Navigator GORAB [HugePedia]
ClinGenGORAB
Clinical trials, drugs, therapy
MyCancerGenomeGORAB
Protein Interactions : CTD
Pharm GKB GenePA164720285
PharosQ5T7V8
Clinical trialGORAB
Miscellaneous
canSAR (ICR)GORAB (select the gene name)
HarmonizomeGORAB
DataMed IndexGORAB
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGORAB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jan 1 18:17:28 CET 2021
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