Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GOSR2 (golgi SNAP receptor complex member 2)

Identity

Alias_symbol (synonym)GS27
Bos1
Other aliasEPM6
HGNC (Hugo) GOSR2
LocusID (NCBI) 9570
Atlas_Id 56148
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 46923117 and ends at 46936841 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GOSR2 (17q21.32) / GOSR2 (17q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GOSR2   4431
Cards
Entrez_Gene (NCBI)GOSR2  9570  golgi SNAP receptor complex member 2
AliasesBos1; EPM6; GS27
GeneCards (Weizmann)GOSR2
Ensembl hg19 (Hinxton)ENSG00000108433 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108433 [Gene_View]  chr17:46923117-46936841 [Contig_View]  GOSR2 [Vega]
ICGC DataPortalENSG00000108433
TCGA cBioPortalGOSR2
AceView (NCBI)GOSR2
Genatlas (Paris)GOSR2
WikiGenes9570
SOURCE (Princeton)GOSR2
Genetics Home Reference (NIH)GOSR2
Genomic and cartography
GoldenPath hg38 (UCSC)GOSR2  -     chr17:46923117-46936841 +  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GOSR2  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblGOSR2 - 17q21.32 [CytoView hg19]  GOSR2 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIGOSR2 [Mapview hg19]  GOSR2 [Mapview hg38]
OMIM604027   614018   
Gene and transcription
Genbank (Entrez)AA775225 AF007548 AF229796 AI129639 AK290890
RefSeq transcript (Entrez)NM_001012511 NM_001321133 NM_001321134 NM_001330252 NM_004287 NM_054022
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GOSR2
Cluster EST : UnigeneHs.596195 [ NCBI ]
CGAP (NCI)Hs.596195
Alternative Splicing GalleryENSG00000108433
Gene ExpressionGOSR2 [ NCBI-GEO ]   GOSR2 [ EBI - ARRAY_EXPRESS ]   GOSR2 [ SEEK ]   GOSR2 [ MEM ]
Gene Expression Viewer (FireBrowse)GOSR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9570
GTEX Portal (Tissue expression)GOSR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14653   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14653  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14653
Splice isoforms : SwissVarO14653
PhosPhoSitePlusO14653
Domains : Interpro (EBI)GOSR2/Membrin/Bos1    SNARE   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GOSR2
DMDM Disease mutations9570
Blocks (Seattle)GOSR2
PDB (SRS)3EG9   
PDB (PDBSum)3EG9   
PDB (IMB)3EG9   
PDB (RSDB)3EG9   
Structural Biology KnowledgeBase3EG9   
SCOP (Structural Classification of Proteins)3EG9   
CATH (Classification of proteins structures)3EG9   
SuperfamilyO14653
Human Protein AtlasENSG00000108433
Peptide AtlasO14653
HPRD04937
IPIIPI00023135   IPI00216965   IPI00909985   IPI00166676   
Protein Interaction databases
DIP (DOE-UCLA)O14653
IntAct (EBI)O14653
FunCoupENSG00000108433
BioGRIDGOSR2
STRING (EMBL)GOSR2
ZODIACGOSR2
Ontologies - Pathways
QuickGOO14653
Ontology : AmiGOGolgi membrane  SNARE binding  transporter activity  SNAP receptor activity  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  Golgi apparatus  cytosol  protein targeting to vacuole  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  Golgi to vacuole transport  ER to Golgi transport vesicle membrane  ER to Golgi transport vesicle membrane  membrane  integral component of membrane  SNARE complex  late endosome membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  IRE1-mediated unfolded protein response  retrograde transport, endosome to Golgi  COPII vesicle coating  vesicle fusion with Golgi apparatus  membrane fusion  
Ontology : EGO-EBIGolgi membrane  SNARE binding  transporter activity  SNAP receptor activity  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  Golgi apparatus  cytosol  protein targeting to vacuole  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  Golgi to vacuole transport  ER to Golgi transport vesicle membrane  ER to Golgi transport vesicle membrane  membrane  integral component of membrane  SNARE complex  late endosome membrane  endoplasmic reticulum-Golgi intermediate compartment membrane  IRE1-mediated unfolded protein response  retrograde transport, endosome to Golgi  COPII vesicle coating  vesicle fusion with Golgi apparatus  membrane fusion  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkGOSR2
Atlas of Cancer Signalling NetworkGOSR2
Wikipedia pathwaysGOSR2
Orthology - Evolution
OrthoDB9570
GeneTree (enSembl)ENSG00000108433
Phylogenetic Trees/Animal Genes : TreeFamGOSR2
HOVERGENO14653
HOGENOMO14653
Homologs : HomoloGeneGOSR2
Homology/Alignments : Family Browser (UCSC)GOSR2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGOSR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GOSR2
dbVarGOSR2
ClinVarGOSR2
1000_GenomesGOSR2 
Exome Variant ServerGOSR2
ExAC (Exome Aggregation Consortium)GOSR2 (select the gene name)
Genetic variants : HAPMAP9570
Genomic Variants (DGV)GOSR2 [DGVbeta]
DECIPHERGOSR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGOSR2 
Mutations
ICGC Data PortalGOSR2 
TCGA Data PortalGOSR2 
Broad Tumor PortalGOSR2
OASIS PortalGOSR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGOSR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGOSR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GOSR2
DgiDB (Drug Gene Interaction Database)GOSR2
DoCM (Curated mutations)GOSR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GOSR2 (select a term)
intoGenGOSR2
Cancer3DGOSR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604027    614018   
Orphanet20482   
MedgenGOSR2
Genetic Testing Registry GOSR2
NextProtO14653 [Medical]
TSGene9570
GENETestsGOSR2
Target ValidationGOSR2
Huge Navigator GOSR2 [HugePedia]
snp3D : Map Gene to Disease9570
BioCentury BCIQGOSR2
ClinGenGOSR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9570
Chemical/Pharm GKB GenePA28816
Clinical trialGOSR2
Miscellaneous
canSAR (ICR)GOSR2 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGOSR2
EVEXGOSR2
GoPubMedGOSR2
iHOPGOSR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:10:18 CEST 2017

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