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GP1BB (glycoprotein Ib platelet beta subunit)

Identity

Alias_namesglycoprotein Ib (platelet), beta polypeptide
Alias_symbol (synonym)CD42c
GPIbbeta
Other aliasBDPLT1
BS
CD42C
GPIBB
HGNC (Hugo) GP1BB
LocusID (NCBI) 2812
Atlas_Id 63916
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 19723543 and ends at 19724774 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GP1BB   4440
LRG (Locus Reference Genomic)LRG_478
Cards
Entrez_Gene (NCBI)GP1BB  2812  glycoprotein Ib platelet beta subunit
AliasesBDPLT1; BS; CD42C; GPIBB; 
GPIbbeta
GeneCards (Weizmann)GP1BB
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:19723543-19724774 [Contig_View]  GP1BB [Vega]
TCGA cBioPortalGP1BB
AceView (NCBI)GP1BB
Genatlas (Paris)GP1BB
WikiGenes2812
SOURCE (Princeton)GP1BB
Genetics Home Reference (NIH)GP1BB
Genomic and cartography
GoldenPath hg38 (UCSC)GP1BB  -     chr22:19723543-19724774 +  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GP1BB  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblGP1BB - 22q11.21 [CytoView hg19]  GP1BB - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIGP1BB [Mapview hg19]  GP1BB [Mapview hg38]
OMIM138720   231200   
Gene and transcription
Genbank (Entrez)BC160146 J03259
RefSeq transcript (Entrez)NM_000407
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GP1BB
Cluster EST : UnigeneHs.283743 [ NCBI ]
CGAP (NCI)Hs.283743
Gene ExpressionGP1BB [ NCBI-GEO ]   GP1BB [ EBI - ARRAY_EXPRESS ]   GP1BB [ SEEK ]   GP1BB [ MEM ]
Gene Expression Viewer (FireBrowse)GP1BB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2812
GTEX Portal (Tissue expression)GP1BB
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13224   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP13224  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP13224
Splice isoforms : SwissVarP13224
PhosPhoSitePlusP13224
Domains : Interpro (EBI)Cys-rich_flank_reg_C    L_dom-like    LRRNT   
Domain families : Pfam (Sanger)LRRCT (PF01463)   
Domain families : Pfam (NCBI)pfam01463   
Domain families : Smart (EMBL)LRRCT (SM00082)  LRRNT (SM00013)  
Conserved Domain (NCBI)GP1BB
DMDM Disease mutations2812
Blocks (Seattle)GP1BB
PDB (SRS)3REZ    3RFE   
PDB (PDBSum)3REZ    3RFE   
PDB (IMB)3REZ    3RFE   
PDB (RSDB)3REZ    3RFE   
Structural Biology KnowledgeBase3REZ    3RFE   
SCOP (Structural Classification of Proteins)3REZ    3RFE   
CATH (Classification of proteins structures)3REZ    3RFE   
SuperfamilyP13224
Peptide AtlasP13224
HPRD00729
IPIIPI00889679   IPI00464990   IPI01018753   
Protein Interaction databases
DIP (DOE-UCLA)P13224
IntAct (EBI)P13224
BioGRIDGP1BB
STRING (EMBL)GP1BB
ZODIACGP1BB
Ontologies - Pathways
QuickGOP13224
Ontology : AmiGOtransmembrane signaling receptor activity  protein binding  plasma membrane  integral component of plasma membrane  cell adhesion  cell surface receptor signaling pathway  blood coagulation  blood coagulation, intrinsic pathway  platelet activation  platelet activation  identical protein binding  
Ontology : EGO-EBItransmembrane signaling receptor activity  protein binding  plasma membrane  integral component of plasma membrane  cell adhesion  cell surface receptor signaling pathway  blood coagulation  blood coagulation, intrinsic pathway  platelet activation  platelet activation  identical protein binding  
Pathways : KEGGECM-receptor interaction    Hematopoietic cell lineage   
NDEx NetworkGP1BB
Atlas of Cancer Signalling NetworkGP1BB
Wikipedia pathwaysGP1BB
Orthology - Evolution
OrthoDB2812
Phylogenetic Trees/Animal Genes : TreeFamGP1BB
HOVERGENP13224
HOGENOMP13224
Homologs : HomoloGeneGP1BB
Homology/Alignments : Family Browser (UCSC)GP1BB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGP1BB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GP1BB
dbVarGP1BB
ClinVarGP1BB
1000_GenomesGP1BB 
Exome Variant ServerGP1BB
ExAC (Exome Aggregation Consortium)GP1BB (select the gene name)
Genetic variants : HAPMAP2812
Genomic Variants (DGV)GP1BB [DGVbeta]
DECIPHERGP1BB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGP1BB 
Mutations
ICGC Data PortalGP1BB 
TCGA Data PortalGP1BB 
Broad Tumor PortalGP1BB
OASIS PortalGP1BB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGP1BB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGP1BB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GP1BB
DgiDB (Drug Gene Interaction Database)GP1BB
DoCM (Curated mutations)GP1BB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GP1BB (select a term)
intoGenGP1BB
Cancer3DGP1BB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM138720    231200   
Orphanet126    796    8692   
MedgenGP1BB
Genetic Testing Registry GP1BB
NextProtP13224 [Medical]
TSGene2812
GENETestsGP1BB
Target ValidationGP1BB
Huge Navigator GP1BB [HugePedia]
snp3D : Map Gene to Disease2812
BioCentury BCIQGP1BB
ClinGenGP1BB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2812
Chemical/Pharm GKB GenePA179
Clinical trialGP1BB
Miscellaneous
canSAR (ICR)GP1BB (select the gene name)
Probes
Litterature
PubMed69 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGP1BB
EVEXGP1BB
GoPubMedGP1BB
iHOPGP1BB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:51:03 CEST 2017

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